| Annotation |
|---|
| Description | jgi|Araly1|496305|fgenesh2_kg.8__2121__AT5G61460.1 |
| Sequence |
TCTCTTTCCC GCCCTAAGCA GTCGCATCAA TGGAACTTGA TCTTTTCTAA TTTGTTTCAG CCGAGTGAGA GAAAACCCTA GAACGCGATA AGCCATGGCA AAATCTGGGG CTCGAGCCAG TGATTCCTTC ATCAAACAGC GTTCTGGGTC GGGTACGATT CTGAGGATCA AAGTTGAGAA TTTCATGTGC CATAGTAATC TCCAGATTGA ATTTGGCGAG TGGGTTAATT TCATCACCGG CCAAAACGGA AGTGGTAAGA GTGCAATACT GACTGCTCTA TGTGTTGCAT TTGGATGTCG AGCCAGAGGC ACTCAGCGCG CTGCCACTCT AAAGGATTTC ATTAAAACTG GATGCAGCTA TGCCGTTGTC CATGTAGAAA TGAAAAACAA TGGAGAGGAT GCTTTTAAGC CTGAAATTTA TGGTGAAGTT ATAATTATCG AACGCAGGAT AACTGATTCT ACTACATCTA CCGTTCTCAA AGATTATCTA GGAAAAAAAG TAAGTAACAA AAGGGAGGAG CTACGGGAAC TTGTTGAACA TTTTAATATT GATGTTGAAA ACCCGTGTGT GGTAATGAGT CAAGACAAAA GCAGGGAGTT CTTACATTCT GGAAATGACA AAGATAAATT CAAGTTCTTT TTTAAGGCAA CCCTTCTTCA GCAAGTCAAT GATCTTCTCC AAAGTATCTA CGAACACTTG AAAAATGCAA CTGCTATAGT CGATGAATTG GAGAACACAA TTAAACCAAT AGAAAAGGAG ATCAGTGAGT TGCGTGGAAA GATAAAGAAT ATGGAACAAG TTGAAGAAAT AGCTCAAAAG TTGCAGCAGT TGAAGAAGAA ACTGGCTTGG TCATGGGTAT ATGATGTGGA TAGGCAGCTC CAGGAACAGA CTGAGAAGAT TGTGAAGCTT AAAGAACGTA TACCGACTTG CCAAGCTAAA ATAGATTGGG AACTGGGTAA AGTAGAATCG TTAAGGGATA CATTGACCAA GAAGAAAGCT CAAGTTGCAT GTCTGATGGA TGAATCAACT GCAATGAAGA GAGAGATAGA GAGTTTTCAC CAATCAGCGA AGACGGCTGT ACGAGAAAAG ATTGCTCTAC AAGAAGAATT CAATCATAAG TGCAATTATG TTCAAAAGAT TAAGGATCGT GTTAGAAGGC TTGAACGGCA GGTTGGAGAT ATCAATGAAC AGACAATGAA AAACACACAG GCTGAACAAT CTGAAATCGA GGAGAAACTA AAATATTTGG AGCAGGAGGT TGAGAAAGTT GAAACCTTGC TTTTCAGATT GAAAGAGGAA GAGAACTGCT TACTGGAAAA AGCGTTTGAT GGGAGGAAAG AGATAGAACA CATCGAGGAT ATGATTAAAA ACCATCAAAA GAGGCAAAGA TTCGTAACGT CGAACATTAA TGATCTGAAG AAACATCAAA CAAACAAGGT TACTGCATTT GGAGGGGACA GAGTCATTAA TCTTCTGCAG GCTATTGAGA GAAATCATCG TAGATTCAGA AAACCACCAA TTGGTCCTAT TGGCTCCCAT GTGACTTTAG TCAATGGCAA TAAATGGGCT TCTACAGTTG AACAAGCTCT TGGAAACCTA TTAAATGCCT TCATTGTGAC TGATCATAAA GATTCGCTCA CTCTAAGAGG CTGTGCAAAT GAAGCCAATT ATAGAAACCT CAAGATTATC ATCTATGACT TTTCGAGACC AAGGTTGAAT ATACCAAGGC ACATGATTCC TCAGACAGAA CACCCAACTA TTTTCTCTGT CATACACTCT GATAACCCAA CCGTCCTTAA TGTCTTGGTG GATGTGAGTG GTGTTGAGAG GCAAGTGCTT GCAGAGAACT ATGAGGTGGG AAAGGCGGTT GCATTTGGGA AAAGGCTCTC AAATCTGAAG GATGTTTACA CTTTAGACGG ATACCGAATG TTTTTTCGTG GGCCAGTTCA GACTACTCTT CCTCCTCTTC CTCGTAGATC TTCGCGACTC TGTGCTTCTT TTGATGACCA GATCAAGGAT CTTGAAATAG AAGCCTCAAA AGAACAAAAC GAGATAAATC AATGCATTAG ACGTAAGAGA GAGGCAGAGG AGAATCTCGA GGAACTTGAG TCGAAAGTGC GCACACTGAA GAAGCACCGC AGCCAAGCAG AGAAGGTTTT GACGACAAAG GAACTTGAGA TGCAGGATTT GAAGAATACA GTCGCTGCTG AGACCGAAGC ATCACCTTCT TCAAGTGTTA ATGAGCTTCA ACTTGAAATC ATGAAAGACC GAGAAGAGAT AGATGAGAAA GAAGCTTTGC TTGAGAAGCT CCAAAACTGC TTGAAAGAAG CTGAGCTTAA GGCTCATAAA CTTACAGCTT CATTTGAGAA CTTGCGTGAG TCAGCCAAGG GTGAAATTGA TGCCTTTGAG GAAGCAGAGA ATGAGCTAAA GAAGATTGAG AAAGACCTTC AGTCTGCCGA AGCGGAGAAA ATCCATTACG AGAACATAAT GAAAAACAAG GTCCTACCTG ATATTAAGAA TGCTGAGGCT AACTACGAGG AGCTTAAAAA TAAGCGGAAG GAAAGTGACC AGAAGGCCTC TGAAATTTGT CCTGAGAGTG AGATAGAATC TTTGGGTCCC TGGGATGGGA GTACTCCTGA GCAACTCAGT GCTCAGATTA CCAGAATGAA TCAGAGACTT CATCGAGAGA ATCAGCAGTT TTCTGAATCA ATTGATGACC TTAGGATGAT GTATGAGAGC CTAGAACGAA AGATTGCAAA GAAGCGCAAA TCCTATCAAG ACCATCGAGA AAAACTCATG GCCTGCAAAA ATGCTTTAGA TTCACGTTGG GGCAAGTTTC AAAGAAATGC ATCTCTTCTT CGGCGCCAGT TAACATGGCA ATTCAACTCT CACTTGGGAA AGAAAGGTAT CAGCGGACAC ATCAAAGTCA GTTATGAAGA TAAAACTTTG TCCATAGAGG TTAAGATGCC TCAAGACGCA ACAAGCAATG CCGTTCGAGA CACCAAAGGT CTTTCAGGCG GAGAACGTTC TTTCTCGACT TTATGTTTTG CATTAGCTCT TCACGAAATG ACGGAAGCCC CATTTCGAGC AATGGATGAG TTTGATGTGT TTATGGATGC AGTCAGCCGG AAAATCAGCT TGGACGCACT GGTGGATTTT GCAATTGGAC AAGGATCGCA GTGGATGTTC ATTACCCCTC ATGATATCAG CATGGTCAAG TCGCACGAGA GGATAAAGAA GCAGCAAATG GCTGCTCCTC GTTCTTGAAA ACAAAATAAC CTCTCCTTGT ATAGCTCCAT AAAGGGCATC CTCGGCTTAG AGTCAATACT ACAACGAGCT GATGGGAAGT TAGAGAAGAG CTTTGTGCCG TCCATGGTGT ATTGATTTGA TTTTACAGGT GCTGAGTGAG ACCCTTTTTT TTTTGTTTTC TCTCATTTCT GTTTATGACG GTTAGTTATT GTCAAACTTT GATTATAAAC TGTATTATAT ATCATTTT |
| Length | 3498 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18823147.. 18831030 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G61460.1 |
| Description | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| TAIR curator summary | Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. |
| Alias | [ATRAD18][MIM][SMC6B][hypersensitive to MMS, irradiation and MMC][STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3 |
Ahg470771 | Transcription factor IIA, alpha/beta subunit |
| 3.87298 |
Ahg490600 | MATE efflux family protein |
| 5.19615 |
Ahg496588 | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases |
| 6.08276 |
Ahg314229 | winged-helix DNA-binding transcription factor family protein |
| 10.3923 |
Ahg940242 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| 11.6189 |
Ahg940606 | Pentatricopeptide repeat (PPR) superfamily protein |
| 12 |
Ahg326041 | structural maintenance of chromosomes 5 |
| 14.2829 |
Ahg943735 | Mechanosensitive ion channel protein |
| 14.4914 |
Ahg491167 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 15.6205 |
Ahg918538 | folate transporter 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|