| Annotation |
|---|
| Description | jgi|Araly1|338905|fgenesh1_pg.C_scaffold_2001004 |
| Sequence |
ATGGCCACCG ATTCCAGCGG AGTCACAATC TCCGGCAACT TCCCAAATGA CGAGAACGCA GAAACCCTAA ACCTCGACAC TACAGAACTC TACTCATCAG CAATATCCTC CGTCTCTCCA CAATTTCCCC CACCGAAACC ACCGTTCTCA TCTCTTTCAA TCCCTCAATC AAAACGAATC CCTAAGACTA ACTTCATCGT CGATCTCTTC CGCTTCCCAC AACATTCCTC CACCTCCGTC GCTTTCTTCC TCTCACATTT CCATTCCGAT CACTATTCCG GTCTCTCCTC TACTTGGTCT AAAGGAATTA TCTTCTGCTC ACACAAAACC GCTCGTCTCG TCGAAGAAAT CCTTCAAGTT CCTTCACAAT TCGTCTTCGC TTTACCTATG AACCAAATGG TTATGATCGA TGGCTCTGAA GTTGTGTTGA TTGAAGCAAA TCACTGTCCA GGAGCGGTAC AGTTTTTGTT TAAAGTCAAA TTAGAGAACG ATGGATTTGA GAGGTATGTT CATACTGGAG ATTTCAGATT CTGTGATGAG ATGAGATTTG ATTCGTTTCT TAGTGGTTTT ATTGGATGTG ATGGTGTTTT TCTGGATACT ACTTATTGTA ATCCTAAGTT TGTTTTTCCG ACGCAAGAGG AATCTGTTGG TTATGTTGTT AGTGTGATAG ATAAGATTGA TGGTGAGTGT GTGGAGACGA AGAAGAAGGT TTTGTTTCTT GTTGCTACTT ATGTTATTGG TAAAGAGAAG ATTTTGGTTG AGATTGCTAG GAGATGTAAG AGGAAAATTG TTGTGGATCT CAGGAAGATG TCGATTTTGG GGATTTTGGG GTGTGGGGAG AGTGGAATGT TTACGGAGGA TGTGAATGTG AGTGATGTTC ATGTTGTGGG GTGGAATGTG TTGGGAGAGA CTTGGCCGTA TTTTCGGCCG AATTTTGTGA AGATGAATGA GATTATGGTC GAGAAAGGGT ATGATAAGGT TGTAGGTTTT GTGCCTACAG GGTGGACTTA TGAAGTGAAG CGGAATAAGT TTGCCGTTAG GTTTAAAGAT TCGATGGAGA TTCATCTTGT ACCGTATAGT GAGCATTCGA ACTATGATGA GCTTAGAGAG TACATAAAGT TCTTGAAACC TAAAAGAGTT ATTCCTACAG TTGGAGTTGA TATCGAGAAG CTTGATAGCA AGGAGGTTAA TAAGATGCAG AAACATTTTT CTGGATTGGT AGATGAAATG GCAAACAAGA AAGATTTTTT ATTGGGTTTC TATTGCCAGT CTTACCAGAA GAATGAGAAA AATGACGTAG ATGTTGTGTC AGGCTTGGCT GAGGTCTACG CAGGGGAAGA TAAAAATGCA TGTGAAGACG GTGGAGATAA TGTTCCATCA TCTAGAGGAC CCTTATTGCA TGATACAGCT CCAAGTAGTG ATTCTTCGGT GACCGAAAGA TTGCTTGTAG AACTACGTGA TTCTTTGCCT GCTTGGGTCA CTGAAGAGCA GATGTTAATT CTGATTAAGA AGCATGCTGG TAATCCCGTG GAAATAGTTA GTAACTTTTA TGAATGTGAA GCAGAGCTTT ACAAGCAATC CTCTCTTCCC ACGCTTTCCT TGGAAAATCA GCCTGTTTTG TTTGATGACG ATGTAACAGA CTTGCAACCA AATCCTGTGA AGAGCACTTG TCCAGATGTT CAAGCAGTTC AAGAAGGTTT TGACTTACCA AAAAAAATGA ATTTAACAAA GGGTACTATT TCTCCTGGGA AAAGAGGCAA AAGCTCGGGC AGTAAATCGA ACAAGAAGGC CAAGAAAGAT CCAAAATCAA GACCAGTTAG TCCAAGGCAG CCAACCATTT TTAAGTTCTT CAATAAGGTC TTGGATAGTG GATCTAATTC TGTTGGTGTT GGATCAGAGA CTGAAGAGTG TAATACAGAT AAAAAGATGG GCCACAATGA TGCTACAGAA GCATACAAAG AAGTGACAGA TCAATTTATT GATATTGTTA ATGGCTCTGA ATCTCTAAGA GATTATGCTG CTTCCATCAT TGATGAGGCT AAAGGAGATA TAAATAGGGC ACTGAACATC TATTACAGTA ACCCCATACC TGGTGAGGGA GGACTCTCCA GCAAATCAAT TCAGTTTTCG CATTGTCCAG AAGCGTGTTC CTCTCAGGAG GGGAAACAGG CGTCAGAAAA GTCAGGACAT GCAGTCAACA TATGTGTGCA GTCATCAGCA GAGGAAATTG TGGACAAAAA TTATGTATCT CTACCTCCTG AACAATATAA ACCTAAAGAA CACGCCTGTT GGAGGGATGG ACAGCCTGCT CCATATATCC ACCTAGTCCG AACATTTGCT TCCGTTGAAA GTGAAAAGGG AAAGATCAAA GCTATGTCTA TGCTTTGCAA CATGTTTAGA AGCTTGTTTG CTCTCTCTCC AGAAGATGTT CTGCCCGCTG TTTATCTTTG CACAAATAAG ATTTCGGCTG ACCATGAGAA TATTGATCTT AACATTGGTG GAAGTCTAAT CTCTTCTGCA TTGGAAGAAG CATGTGGAAT AAGTCGGCCT ACTGTGAGGG ATATGTATAA TAGCACCGGA GATCTTGGTA AAGAAAAATC TATCCCATCA CAGTTAACTT ATGGAGATGT TGCGCAGCTA TGTCGACAAA CGCAAAAGCT ACTGGTTCCT CCACCTCCAC TTCTAATCAG AGATGTGTTT TCAACTCTAC GAAAGATAAG TGTGCAGTCA GGTACTGGAA GTACTAGGCA AAAGAAAAAC CTTATCGTGA AGCTAATGCG CTCTTGTAGA GAGAAAGAGA TCAAATTTCT TGTAAGAACA TTGGCCCGTA ATTTAAGGAT TGGCGCTATG TTGAGAACTG TTCTTCCTGC ACTTGGGCGA GCAATCGTTA TGAATTCTTT TTGGAGTTGC CATAACAAAG AACTGTCAGA AAACTGTTTC AGGGAGAAAC TTGAGGGAGT TTCTGCTGCA GTAGTTGAGG CTTACAATAT ACTTCCTTCT CTGGACGTGG TTGTTCCTTC TCTCATGGAC AAAGACATTG AGTTTTCAAC GTCAACTCTA TCAATGGTTC CAGGGATACC TATAAAACCC ATGCTTGCTA AAATTGCTAA GGGCGTCCAA GAATTTGTTG AGCTCTTCCA AGACAAGGCG TTTACTTGTG AATACAAATA TGATGGTCAG CGCGCCCAGA TCCATAAGTT ACTTGATGGT ACTGTGCGTA TCTTCTCTCG GAATGGGGAC GAAACAACAG CGAGATTTCC GGATCTTGTT GATGTCATAA AACAGTTTTC TTGCCCTATA GCTGAGACAT TCATGTTGGA CGCAGAGGTG GTTGCAACTG ATAGAAAAAA TGGAAGCAAA CTCATGTCAT TCCAAGAGTT ATCAACAAGA GAGAGAGGAA GCAAAGATGC TTTGGTAACT ACCGAAAGTA TTAAGGTTGA AGTCTGCGTC TTTGTGTTTG ATATTATGTT CGGCAATGGA GAACAGCTGT TGGCTCTTCC TCTCCGTGAG AGAAGAAGAC GTCTAAAGGA GGTCTTCCCT GAGACTAGGC CAGGTTATCT TGAATATGCT AAGGAAATTA CAGTGGAAGC AGAAGAAGCT TCTTTGAATA ATCAGGACAC TTTGAGTAGA ATAAATGCTT TTTTGGGAGA AGCATTTCAG TCATCTTGCG AAGGAATCAT GGTTAAGTCT TTAGATGTTG ATGCAGGATA CTTCCCCACA AAGCGTTATG ATTCATGGCT CAAGGTTAAG CGAGATTATG TAGATGGATT GGGCGACACA TTAGATTTAG TTCCTATAGG TGCTTGGCAT GGCAACGGGA GAAAAGCGGG ATGGTATAGT CCATTCCTTA TGGCCTGCTT CAACCCTGAG ACTGAGGAAT TCCAGAGTGT CTGCCGTGTC ATGTCTGGGT TTTCTGATGC CTTTTACATC GAGATGAAAG AACTCTACTC AGGGGATAAG ATCCTTACGA AAAAGCCGCC TTACTACAGA ACAGGGGAAA CACCTGACAT GTGGTTTTCC GCAGAGGTTG TTTGGGAAAT CAGAGGTGCA GATTTCACGG TCTCGCCTGT TCACAGTGCC GCTTTAGGTC TCGTCCATCC ATCCCGAGGT ATCTCCGTTA GGTTTCCGAG ATTTATTCGT AAAGTAACAG ACAGAAATCC GGAGGAATGC AGCACAGCTG CAGATATCGC AGAGATGTTT CATGCTCAAA CCAGAAAAAT GAACATCACC TCTCAACAAT AA |
| Length | 4242 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 11076393.. 11083625 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G66730.1 |
| Description | DNA LIGASE 6 |
| TAIR curator summary | Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. |
| Alias | [AtLIG6][LIG6][DNA LIGASE 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg485847 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein |
| 2.82843 |
Ahg487621 | myosin heavy chain-related |
| 12.7279 |
Ahg485499 | glutamate receptor 3.6 |
| 12.9615 |
Ahg935657 | |
| 13.6748 |
Ahg356183 | Plant protein of unknown function (DUF827) |
| 16 |
Ahg316589 | SET domain group 26 |
| 17.4642 |
Ahg479466 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
| 20.4939 |
Ahg495722 | expansin A14 |
| 20.7846 |
Ahg482159 | EXS (ERD1/XPR1/SYG1) family protein |
| 22.5832 |
Ahg484189 | myb domain protein 88 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|