| Annotation |
|---|
| Description | jgi|Araly1|487351|fgenesh2_kg.6__485__AT5G05560.1 |
| Sequence |
ATGCCTCCAG GGGTTCGCCA ACTTACTGTC CTCGGAAAGT TCAAACCTTT CGGTCTAATC GCCGAAGCTA CTGATGGTAA ATCCCCGGAC GATTCCTATC AGTATTTCCT CTTCGATCCT GAGCTCACTG AGAGAGCACG AGCTCTTCAT CCGAGGCAAC TGGTAAGAAG TGTAGAAGCT AATTTCATTG GATATTGCAT AATCTGGACA AGCGGTTCGC GCGTCCTCAA GCGGTTTACC TTGTCTTCTG CCGTTATTAA GGTAATGTGT TTTTCTGCGT GCTGGAGCCA CCTTGGTCGA GGGACAGAAG CTTTTCTTTG TGTGTTACAA ATTGGTTGCT TAACAATATA CAACACATCA GGCGAAGTTG TATCTGTTCC ACTTCCGCGT ACTGTCAAAT CAATATGGTC TCTACCATAT GGTCTACTTC TTCAGCAAGC TACTGAAGTG AATCCAGCCT CACATGTTCC ATTTTCTTCT GTTAGCCCCA TCCTTAGTTC CCGTGAGATG CTGCGCCAAA AAAAAGAAGT TGGGAATAGT TCACCACAAA ACTTCCATTC CCCAGGCACG CATGACCTTA ACAAAAGAGA TATGCCATAC ATGTCTTCCC ATCTGATTCT AAGAGATCCA TTAGAGGAAC CTGGGCCAAC CTATGTAGAA GAGAGGGGGA AGTTGAATAT AATGAAGGAC TACGATGAGA GAACAATTTG GACAAGTGAC CTTCTACCTC TTATGACGTC GTATAACAAA GGCAAGATGC AACATTCTGT GTGGGCGGCC GAATTTATAG AGTCAAACCT TGAAGCTTCT GCTTCATGTG CAAGCGGTAT TGTTCCTGAT GCTGTTCTCC CAAAGCGGAT TTCTTTTCGT AGAATATGGC AAGCCAAAGG TGCTAAGAAA GCTGCATCTA AGGTCTTTTT GGCAACTGAT GATGCAGTCC CAGTAATTTG CTTTCTGATT CTAGAACAAA AGAAGCTGTT ATCGGTGGGA CTCCAAACTG TTGAAATAAA TAACGAAATC CTGTTCGATG TTAAGGCTGA TGTAAGCTGG AGTGTCTCTG CGATTGCTGC TGCACCTGTT GTTGTGACAC GTTCTCAAGT GAAAATAGGA CTGCTTCCAC ATTTGGATGT CATTGTTTTA TCTCCAGAAA ATGACCTCTT TCTCTATTCA GGAAAACAAT GTCTCTGTAG ATATGTATTG CCTTCTTGGT TGGGAGAAAG TATTGGTTTC GGGGATGGAG TGTCTGCAAA AACAGATTCA GGTTTCAGGG ACCTGAAGAT CACAGGATTG TCTGATGCTG TGTTAGGATG TATCAATCTC TCAGTTAACC ATTCACAGAT CTTTCGGTGT GCTTTAACTG GTAAACCTTC ATCGTCACTT GCAAATGATT GCATAGCAGC CATAGCTGAG GGACTACGAT CCGATCTGTA CAGTTTATTT CTCTCTCTTC TTTGGGGAGA TGGTCATTCT GACCAGAAAA GTTCCAGTAT TCATTTTGAA TGGGAAGCGT TATGCAACAT TTTTCTGGAG ATCTGTCAAA AGCCTACTGT TGTGCATCTG AAGCAACCCA AAACATCAGA GTCCTCCTGG GAGTTTCTTC TCAGCAGTAA ATTTCATAAG ACCTACTCTA GGTTTCACAA TGGTATTACT TCAATAAATC GTTTGGATCT GGAAGGAATT GTCCCATTTG ATTCCAAGAT TTGTAGTGAA GAAACATCGG GCAGCTCATG TGAATTAATG GTCCAGAGTT TAGATTGTCT CCATGCAGTT TATGAGAGCT TGAAGATGGA TAATCTACGG AAACAGGATT TGCATCACTT GGCTGCTTTG TTGTGCAATA TTGCCAAGTT TCTGGATGAG AAGTGTTACT TAGATTACTA CATACGTGAT TTTCCTCGTC TGTCAACAAC TATAGGGGCG TGCACAACCC TTTCTTCTAG CAGAAAACCT CCAAATTTAT TTAGATGGCT TGAGAACTGT TTAAGGCGTG GATGTTTATC AACAAACTTT GATGACCTCC CAGATTTGAT TCGTAGAGAT GGGTGCTCGA TAGTAAGCTG GGCAAGGAAA GTTGTTTCCT TCTACAGTGT GTTATTTGGT GATAAGCCAG AAGGACGGAC ACTTTCATCA GGTGTCCCCT GTAATATCGC GCCAGGATCA TACTCAAGTA ACGAGGAACT CACTATCTTA GCTATGGCAG GAGAGAGATT TGGGCTTCAC CAACTGGATT TGCTACCTTC TGGTGTTTCT CTCCCGCTGA GACATGCACT GGATAGCTGT CGGGAATCTC CTCCAGCTGA CTGGCCAGCA ATTGCTTATG TGCTTCTTGG ACGAGAAGAT ATGGCCCTAT CCGTCTTCAG AAATTTGAGT TCATCTAAAG AATTGGAGAT GCAGTCAAAT AAGAGTTTGA TATCGATGTC CATACCGTAC ATGCTACATT TGCATCCAGT AATTGTTCCA TCCTCTTTAT CTGAGTCGAT TGGCTTGGAA AACACTAAGA TTGAGGATAC AAATTCTGTG GATGGTTCTG TGATAGATGG AATGGAGCAT ATCTTCAACT CCTACACACA GTTACGGTAT GGCCGGGATC TAAGGTTGAA TGAGGTTAGA CGTCTTTTGT GCTCTGCAAG ACCTGTGGTA GTTCAAACGT CTGCTAACCC TACTATATCA GATCAGGAGC AGCAACAGGC GTTTACTGTA CCAAAGCTTG TTTTAGCTGG TCGACTGCCT GCTCAACAAA ATGCCATTGT TAATCTAGAT CCAAACATAA GGAATATCCA AGAACTAAAG ACATGGCCGG AGTTTCATAA TGCTGTTGCT GCTGGTTTAC GACTGGCTCC GCTTCAGGGA AAGGTCTCCA GAACGTGGAT TAAATACAAT AAACCTGGAG ATCCAAATGC TGTTCATGCT GGACTTCTGT TTGGACTCGG ATTACAGGGA TATTTGCATG TGTTAAACCT TAGTGACATA TACCAATATT TCACTCAGGA CCATGAGAGC ACTACGGTAG GTTTGATGCT TGGTCTGGCT GCTTCATACA GGAGAACAAT GCAACCTGAT ATTGCAAAGG CTCTCTTTTT CCATGTTCCG GCTCGATACC AAGCTTCATA TGCTGAGTTT GAGATACCAA CACTTCTACA GTCTGCAGCT TTAGTCTCCG TTGGCATGCT ATTTGAAGGA TCAGCACACC TGCAGACAAT GCAATTACTT TTGGGTGAAA TTGGCCGCAG AAGTGCCGGG GACAATGTCC TTGAAAGGGA GGGTTATGCT GTATCTGCAG GATTCTCACT TGGTCTTGTT GCTTTGGGCC GTGGAGGTGA TGCGCTCGGT TCCATGGACT CCTTGGTCAA TCGCTTACTC CAGTATTTAG GAGCAAAAGA GGAAAAATCT ATCCTTGCAC CATCACTTGA AGATCACCGA AGTGCTGCAC AGACAACAGA CGGAAGCACT TCCAATGTTG ATATAACTGC ACCTGGAGCT ATAATCGCTC TCACATTAAT GTATCTTAAG ACAGAATCAG AGGTCATCTT CTCAAAGCTC TCGATTCCTC AAACTCATTA CGATTTGGAG TGCATTAGGC CTGATTTCAT AATGCTCCGT GTCATTGCTC GGAACTTGAT AATGTGGAGC AGGATCTGTC CTACTTGTGA TTGGATTCAG TCTCAAGTTC CTGAAGTTGT CAGAAATGGT ATCAGCCACC TGCGAGATGA CATGGATGAT ATGTATGAGG TGGATGTTGA AGCCCTTGTT CAGGCATACG TCAATATAGT GGCTGGGGCC TGCATTTCAC TTGGGCTGAG ATTTGCTGGT ACGAGGGATG GAAATGCTCG TGACTTACTT AACAACTACG CCCTCTATCT TTTGAATGAG ATCAAGCCTC TTTCTGCTAC ACCTGGAAAT GCATTTCCCA GGGGAATATC CAAATATGTT GATCGGGGAA CGCTTGAAAT GTGTCTTTAT CTTATCATTA TTTCTCTGTC AGTGGTCATG GCGGGATCAG GAGACTTGCA AGTATTTCGG TTGTTGAGAT TTTTGCGCAG CCGGAACTCT GCTGATGGAC ATGCTAACTA TGGCACGCAA ATGGCGGTGA GCTTAGCCAC AGGATTTTTG TTTCTTGGAG GCGGTATGCG AACATTTTCA ACGAATGATG GCTCACTTGC AATGTTACTC ATTACTCTCT ATCCACGGTT ACCTTCTGGA CCAAATGACA ACCGTTGTCA CCTCCAGGCA AGCAAGAGTT TCTTTTCTAT AGAAAATGTT ACCTCAAGAC CAATCACTTT GTGGATTGCA TTCAGGCATT TATATGTCCT TGCAACAGAG GCTCGTTGGC TGCAGACCAT TGATGTTGAT TCTGGTCTGC CTGTCTATGC CCCTCTAGAA GTCACAGTAA AAGAGACAAA ACTTTATTCA GAAACAAGAT TTTGCGAGAT TACACCGTGC ATTCTGCCAG AGCGTGCTAT TCTAAAGAGA ATTTGTGTAT GTGGTCCTCG ATACTGGCCC CAACAAATAG AGCTAGTTTT TGGTTTAAGA ACTCTGGGAG AATCTAATAT GATTGCTAAT AGTCATAGAG AACTGGACTC CGAAAGTGTT GATCACTTGG TCAGCACTTT CTCATCAGAT CCAAGCCTGA TAGCGTTTGC ACAGTTGTGC TGTGACAAAT CTTGGAATAA CAGATCTCTT TGGCCTCTAT ATCCTAAAGT CATAACAGAG TTTGATAGAA GCCCCCAAAA GGGTGAATTC TCACAAATTC ATTTATGCAG ATCTGATTCT GAATTCAAGG AGTTCTGTCT GCAAGTGTTG TTTGACTGTA TAAGCAAGGA TAGACCAGCT CTTTTGCAGG TTGCTCTTGC CTACAACGAA GCGGTATCAA GTGGAAGATT GGCCTCTTCA GGTGGCTTTG TACAATCAAT CTTCTTATCA TCGCTGAGAA AGCGATGTGA AGAGATTTTG AATTGTTCAA CTGAGCTGAA GATTAATTTG AGGAATTATT TGACCTCAGA AGCATGGCCT GATGATAAGA ACTCAAAGCT GCAGAAAGAT ATAATAATTC TCTCATGGTA TTTAAAATGG TTCAGCGTAC CATCGCCATC GATCATCAAA GCAGCAGTGG AAAAGATCAA ATCCAAGTCC AAAAACTCAA CTTCGGCAAT ACCTTTGTTG CGGTTGTTGT TACCAAGTAC GCATATTAGT GCGATTAGTG AAATTGATAG TGTGTTTTTT TCCTCAGATG AGACAACTGT ATCGTGAAAA CATGATTTCG TACTCTCTTC GTTTGGGCTA TTAA |
| Length | 5284 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 1940915.. 1954065 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G05560.1 |
| Description | E3 ubiquitin ligase, putative |
| TAIR curator summary | Arabidopsis thaliana E3 ubiquitin ligase |
| Alias | [APC1][EMB2771][anaphase promoting complex 1][EMBRYO DEFECTIVE 2771] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg477069 | histone acetyltransferase of the CBP family 1 |
| 4.58258 |
Ahg950867 | U5 small nuclear ribonucleoprotein helicase |
| 5.09902 |
Ahg949543 | quinolinate synthase |
| 6.32456 |
Ahg477743 | RNA polymerase II transcription mediators |
| 6.48074 |
Ahg473514 | SUPPRESSOR OF AUXIN RESISTANCE1 |
| 6.78233 |
Ahg495654 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 7.28011 |
Ahg332253 | |
| 8 |
Ahg491382 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| 8.48528 |
Ahg943625 | glycosyl transferase family 1 protein |
| 8.94427 |
Ahg474984 | Protein of unknown function (DUF3741) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|