Detail



ID : Ahg471490

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471490|fgenesh2_kg.1__1444__AT1G13340.1
Sequence
ATTCAAATGA AGACAACGTA AACTCTTATT CCTCCTCTCT GCAACTCGGC CATGGGGAAG AAGCTTGACG CTTTGCTTGG TCGGAGTTTC AAGACCAACA AGTTCAAGTC TCTTATCACC TTAGCTCTCA CAAGGCTCTT TATTCTTAAG AACCAGCGTC AAGCCAGACT CTCTCAAGCC ATCTCTGATG TCACCGAGCT TCTCAAGCTC GGCCATCACG AGAATGCTTA CCATAGAGTC GACCAAGTCG TCAAAGACCA AAACACCCTG GACGTTCTCT TCTTCATCCA TGGCTACTTC ACTCTCTGTA TCGACCGTAT TCACCTCTTT GAACACAACA GAGATTGTCC TGAAGAGCTT CTAGAAGCTG TTTCGGGCTT GCTTTTTGCA GCTTCTAGAA TCGGTGAATT CCCTGAGCTT CAAGAGATTC GTAGTGTTTT GATTTCACGT TTTGGTAAAG ATCTCGCTGC GCGGTCTATT GAGTTGCGCA GTAATTGTGG GGTTGATCGC AAAATAATTC AGAAGTTGTC GACAAGACAT CCACCGAAAG AAGTTAGAAT GAAGGCTTTG AAGGAGATTG CTGCAGAGAA TAACATTGTT CTGAAACTAG AAGAAGCTTC TACGTCCACT GAGGGAACAA CACATATGCA GGGAACATCA GATGTTAGTA AGGCTAAGCT AACAAGTGAA GATGAGAGAG GAGAAGGTTA TGGTTTATCT GATTCGGTCA AGAGAGGAAA GAAGAAGTAC AAAGATGTGG CTGATGCTGC ACAAGCAGCG TTTGAGTCAG CAGCTCATGC AGCAGAGGCT GCACGAGCGG CTGTGGAGCT TTCTCAGTTT TCTCCTCGTG GACATGACAG TCCGGGTAAC ATTGGTGGGG GAAATTCATT TCATGGGTCT GAAAACAAAG AATCAGAACA AGAACAAGGA GGTAATGATG ATTCTTCAGA AGGGGAAGGG GATGTGAGGT CAGAATCTAA GAGGTCGATG TCGGATTCAG AAGATATTAT TGATGATCTC CCAGTGATGT CATTCAGAGA AGACCCTGTG AAGCTATTGG AGAAGGATAC TGTTATCTAT GATAGTGAAG AAGAAACCCA ATCTAGTGTT GAGACTAATA CTATTCCTAC GTCTAAAGAT GAGCCAAGTC TTATGGTTGG TTCGAATAGA GCGGATACAA GACATGTGGA CCACATTGTT CATTCAATTG AAGATCCTAT TATGCGTAAA GCAGGTTTGA AGGGTCCGGT TTCAGTCAGG ACTAGACAGG TTCGTGGCTA CTAAGTACAA ATATTATAAT TTTTCAGGTG CATCTATATG GTTTAACCAC TGAGTTTTGT ATTTTTCTAT GTTCTTTTTT TGCTCAAGGG TGTAAGATTA TTTTGTTCTT TATGGATATA AGCTTTCAAT GATGTTGAAC AGTTGCATAT GTGTGTCTT 
Length1439
Protein Sequence
Protein Residue
Map Locationscaffold_1: 5333830.. 5335479
Download Sequence
A.thaliana
AGI-codeAT1G13340.1
DescriptionRegulator of Vps4 activity in the MVB pathway protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
3 Ahg347189 zinc finger (AN1-like) family protein
3.4641 Ahg909804 plant U-box 54
6.32456 Ahg484989 C2H2 and C2HC zinc fingers superfamily protein
8.83176 Ahg475850 Eukaryotic aspartyl protease family protein
17.7482 Ahg894427 SPFH/Band 7/PHB domain-containing membrane-associated protein family
18.303 Ahg488135 Uncharacterised conserved protein UCP015417, vWA
19.105 Ahg940786 GRAM domain family protein
20.199 Ahg351629 WRKY DNA-binding protein 50
21.3542 Ahg900074 Protein of Unknown Function (DUF239)
25.0998 Ahg939077 Phosphoglycerate mutase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression