| Annotation |
|---|
| Description | jgi|Araly1|472969|fgenesh2_kg.1__2923__AT1G27650.1 |
| Sequence |
CTCGCGAACA AAGCAAACCC TAGATCATCC ATCGACGAGT GAGACGGCAG CTCCTCGTCG GCAAATTCCT CCCACCGGCG GCGACTATTC ACCCTCAGAT CTCTCAATCT CTATAACATT TTGGTGGAAA TTCTGCCATG GCGGAGCATT TGGCTTCAAT TTTTGGTACT GAGAAGGACA GAGTGAATTG CCCATTCTAC TTCAAGATTG GCGCTTGCCG TCATGGTGAC CGGTGCTCTC GTCTTCACAA CCGTCCTACC ATCTCCCCAA CACTCCTTCT TTCCAACATG TACCAAAGGC CTGACATGAT AACCCCTGGT GTTGACGCTC AGGGCCAACC GCTCGACCCG CGTAAGATCC AAGAGCACTT TGAGGATTTC TTTGAGGATC TTTTTGAGGA ACTCGGAAAG TTTGGCGAGA TAGAAAGCCT CAACATTTGT GACAACCTTG CTGACCACAT GATTGGCAAC GTATATGTTC AGTTTAAGGA AGAGGATCAG GCTGCAGCTG CTTTGCAGGC TCTGCAAGGT AGGTTCTATT CAGGACGTCC CATCATTGCG GATTTCTCTC CTGTGACGGA TTTCCGCGAA GCCACGTGTA GGCAGTATGA AGAAAACAAC TGCAACCGTG GTGGCTACTG TAATTTCATG CATGTGAAGC TTGTTTCGAG GGAACTAAGG AGAAAACTCT TTGGGAGATA TCGGCGGTCA TACCGCAGGG GAAGCAGAAG CAGGAGCAGA AGCAGAAGTA TTAGCCCCAG GAACAAGAGA GAGTATGACC GACGTGATCC TCCTCACAGG GAATTCAGTC ACAGGGACAG AGATCGCGAG TTTTACCGTC ATGGAAGCGG GAAAAGGAGC AGTGAGAGGT CGGAGAGGCA AGAAAGGGAT GGATCAAGGG GTAGGAGACA AGCAAGCCCT AAACGAGGAG GGAGCCCGGG TGGCGGTAGA GAAGGAAGTG AGGAGAGGAG GGCAAGGATT GAGCAATGGA ACAGAGAACG GGAGGAGAAG GAAGAGGGAG GAGCATAAAA CAGTTGGTTA CTCAGATCAT AATTGCTGCT ATGTGGTTTC TGCGTCTGCT TCTCTGCGTT TGCTGATTGT TTCTGAAATC GGTAAAATCT GGTGATGGAT TTTTCATTTG GTTGTTCTAA TTTGGAACTT GAAATGAGTG GAATCAACTC CTTTAGATTA TAAAATGTTT GGGGTTACTT TCTTGTAGTT TTGATTAGGA AAAACCGTTG TTGCCTCGTC CCCTTGTTAG TGTTCCTTAG AACTTTGTAC TATCTTCTGT TGGTTTAAAA |
| Length | 1300 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 11529582.. 11531326 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G27650.1 |
| Description | U2 snRNP auxiliary factor small subunit, putative |
| TAIR curator summary | U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. |
| Alias | [ATU2AF35A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg482309 | AT hook motif DNA-binding family protein |
| 1.73205 |
Ahg929419 | ATP binding microtubule motor family protein |
| 3.4641 |
Ahg491589 | Coatomer, beta subunit |
| 3.87298 |
Ahg488180 | Protein of unknown function (DUF155) |
| 4 |
Ahg474535 | 6B-interacting protein 1-like 1 |
| 4.79583 |
Ahg487340 | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein |
| 6.9282 |
Ahg489018 | |
| 7.07107 |
Ahg472902 | |
| 8.7178 |
Ahg480759 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 9.21954 |
Ahg474319 | Insulinase (Peptidase family M16) protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
|
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| Growth Chamber expression |
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