| Annotation |
|---|
| Description | jgi|Araly1|474047|fgenesh2_kg.1__4001__AT1G49040.1 |
| Sequence |
CGAACGACTT GGATAAAAAA ACAAAGGAGC CCGAATTGAA GCAACTACTT TTCTCCATCA TCGACGAAAT CCGCCAAAAC TGATCTCACA TTGAAAACCC AGATCATGCA CTAGAACCCA GTTTTTAGAT CTCGAGGAAG ACAATGGGTC GGATCTTCGA GTACTTCGTC GTGTGCGGAC TTGGTCCAGA GATACGAACC GTAGATGGAG ATCTTGGATT CCATGGAATG CAAACATTCT ACTTGCCTGC TCTTCTCGAC CAGTTCCCTC CTACTGATCA ATCTCCTTAC CCTGCCCCTC CCCCTCAGCT TCCTACTTGT GTTCTTCCTG CTGGGGTGGA GTTCCATTCT TCTGGGTTTG TTTCCAGTGA CCCTGCAAGT TTCCCACGGA GCTATCCCAT AGTCTTGACG GAGGGTGATG GATCAAAAAT ATTTGTCAGT TGCATTGCAT TTCGGGATCG AGTCTGTGAG GATATTATTG AAGCTTATCG CTTACCGCCG AATACATACG CAGACAAGTG TATCTGTCTT GTGTCTCACG CCCCCAATTT CCGTGTTCTT CGTAATTCTC TCGAAGAGAT TTTTGTTCTT TGCTTCTCTT CAGAAGGAAG CTGTAAACCA CTGTGGGATA TTATCACCTA TATGGTATCT AATGTGCCAT TGCCGACTCC CGGAAAAGAC AGAGTCTTGT TTGCTGTCGA GAATTGCCTG CTCTCTGTGG AAGCACCTCC AGAGGATAGT CTTCCTCAGG CAGATATATC TCTCCAGCCT CTTGTACAAT GCTTGGATGT CGACAACTTG ATTAAGCTGT TTACATCTGT TCTAGTTGAA AGGAGGATTT TGATTCGATC TAATAAGTAT TCACTTTTGA CTCTGGTGTC TGAATCCATA TGTCATATGA TTTATCCTTT CCGATGGCAG CAAGTCTACA TTCCATTACT ATTTTTTAGT GGAGTAGACT ACATTGATGC ACCAACACCA TATATGATGG GTCTCCACTC TGATGTCGAT ACGTCCTATC TTGCTATGGA AGGCGTTGTA GTGGTGGATC TTGACTTTAA CCAAATCACT ACTTCGGAAG AGATACCTCC GATACCAGAG CCTGAGCTCA GCGCTTTGCG AAACGATATC TTGAAACTAC TGCACCCTAA TGTCGTCGGG ATTGATCAGT TGAAGGGCTT TGGTAGTTCT GTTGAGCAGT CCCCCAAAAG CCTTAGCAAA CCTTGGGGAG AGGATCATGA CCTTCAACTC AGGGTTATAT TCTTAAAGTT TTTTGCATCT ATCTTGGGTG GCTACCGCAA TTTCATAGAA AACAAAGTTT TTAGCAGTGA TGCGTTTCTG AAGAGACGGT CTCGTACCAC AAATCAGCCA CCAGAGCCTA TGTTGGTTCA ATTCTTGGGC TCTTTTGCAT TCCTCGATTA CCTTGAAAGG CGTCTAAGCT CTGATGAGAA CAGTACTAAT CTCCTTGAGA AGTTACAAGA TGCAGTTGGA AGGGGTCAAG ATGCGATGTC GATTCTGCCT AAATCTTCTA TGGAGCCTGA AATAATCACA ATAGCTGAGC CAGAAGTTGA AGAATCAGCC ACCAGGTATA CCTATGACAG GTTTCCTGCT AATGTTCGGT CAGAGGAACA AGAAGAAAAG CGAAAGCAGA TCCTTGCAGC AGCAAGCGGG GCTCTTGAAT CCAATGGAAG GCATCCTCCA AGCTCACCGC CAGGGAAGAA CACAAAAGAA GACAATTTCA GTTCAATGGA GAGGGCTGCA GAAAGAGAAC GAATGGTCTT GGATATACAA GTCAAGTTGC AGGGATTATG GCTCCGTCTT CTGAAACTAG GTTCAGATGA AGATCCTCTT TCTTCATTCG AATACGGCAC AATATTGGCT CTCATCGAAT CTGATGCTGA GGGGATTGGT GGGAGTGGCT TTATTGAGTG TATACGAGAG CATTTGTATT CGGGCTGGCA TGGTCGATTG ACCGAGGAGC AGTTCATTGC GGTCAAAGAA TTGCTCAAAA TGGCTGTTGG CCGTGCTGCT TCAAGAAGCG ATTTGTCGAC AGTGCGGGAC GCACTTGAAG TTTCTGCAGA AATGTTCAAG AAGGATGCCA ATAATGTTTC AGACTATGTT CAGCGTCATC TCATCTCCAT ACCCATCTGG GAGGAGTTAA GATTCTGGGA GGGTTACTTC GAGTATCTCA TGGAGCAGCC TGCGAATGAA TCAGTGAACT ATGCTACGTT GGTCACAGCC AGGCTAATCA TAGTGGCATC ACATATGGCT GGCTTGGGAC TTCCTGATAC AGAAGCTTGG AACATGATCG AAACAATAGC AGAGAAACAA AAACTTGGAT ACAAATTACT GATTAAACTC AGAGGGTTCC TGTCGCATGT TCAGCAACTT CGTGTAGGCT ATTGGGGTGC TTCTTCATTT AAGCAGCAGG CCATATCTTC TGGGTTGCCA TCCCCACGTC CAAAAGATGT CTCTGTCTCT GATGAAACCC AGCAACCCTC AGAAGCTTCT GGAAGGAGTT GGGTTCAGAG TATGTTTAGC AGAGATACAG CATCGAGAGC GAACTCGTTC AGTCGTGTTC GTAAGTGGGT ATCTGATAAT GCATCTTCAG ACATAACTGC TGCTGCGCAG AAGAAAATCC AGACCAATGT ACGTGTTCTG AAGGGTCATG GCGGTGCTGT CACTGCCTTG CACTCTGTGA CAAGAAGGGA GGTCTGTGAT CTTGTGGGCG ATCGCGAGGA TGCTGGATTC TTTATCAGCG GTAGTACAGA CTGTCTGGTT AAAATTTGGG ATCCAAGTCT TCGTGGTTCT GAACTCCGAG CAACTTTGAA AGGACATACT GGAACCGTGC GTGCTATAAG CTCTGACAGA GGAAAGATAG TTTCAGGATC AGATGATCAA TCTGTGATCG TATGGGACAA ACAGACAACT CAACTTCTAG AAGAACTGAA AGGCCATGAT GCACAGGTAA GTTGTGTCAA GATGCTTTCA GGCGAACGTG TCCTCACAGC TGCACATGAT GGAACAGTTA AGATGTGGGA TGTTCGAACC GATATGTGTG TTGCAACTGT TGGCCGATGC TCTAGTGCCA TTCTTTCGCT TGAATATGAT GACTCCACAG GAATCTTGGC TGCTGCTGGC AGAGATACGG TTGCAAATAT ATGGGATATT CGGTCAGGTA AGCAAATGCA TAAGCTGAAA GGGCATACCA AATGGATACG ATCAATTCGA ATGGTTGAAG ATACCTTAAT TACTGGAAGT GATGACTGGA CAGCAAGAGT GTGGTCTGTC TCCAGAGGAT CATGCGATGC AGTGTTGGCA TGCCATGCTG GGCCAGTACA ATCTGTTGAA TACTCCGCAT TTGACAAAGG AATAATCACA GGCTCGGCTG ATGGGTTGCT ACGCTTTTGG GAAAATGACG ACGGCGGCAT TAAATGCGTG AAGAACATAA CGCTCCATAG TTCTTCTATA CTATCAATCA ACGCTGGTGA AAATTGGTTA GGCATTGGAG CAGCAGATAA CTCAATGTCT CTTTTCCATC GTCCTTCTAG TGCCGGAACC AAAGTCTCAG GCTGGCAACT TTATAGAGTA CCACAAAGAA CAGCCGCCGT GGTGAGATGT GTTGCGTCAG ATCTCGAGAG GAAACGGATA TGTAGCGGTG GCCGGAATGG AGTTCTCCGG CTGTGGGATG CCACCATCAA CATCTGATTT GTCTTCCACA ACTTTGTCTT TGTGTATCTT TTAACCTTAT GTGTTGTTGT TACCTTGTAT GTTTGCTTAT GCCCTTCGAG ATTTGTGGTT TAACAAAAAT TTTGTTTTTT TTTTATATAT GTTTTCTCAG TGATTCTTGT TTCGATCGAT CCACTAA |
| Length | 3867 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 23971071.. 23980948 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G49040.1 |
| Description | stomatal cytokinesis defective / SCD1 protein (SCD1) |
| TAIR curator summary | Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. |
| Alias | [SCD1][STOMATAL CYTOKINESIS-DEFECTIVE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg496189 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| 2.23607 |
Ahg478525 | |
| 3 |
Ahg471093 | shaggy-like protein kinase 41 |
| 3.4641 |
Ahg491547 | |
| 4.89898 |
Ahg480549 | multimeric translocon complex in the outer envelope membrane 132 |
| 5 |
Ahg314555 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 5.09902 |
Ahg473256 | auxin response factor 6 |
| 5.38516 |
Ahg327694 | transducin family protein / WD-40 repeat family protein |
| 5.47723 |
Ahg933310 | vacuolar proton ATPase A1 |
| 5.74456 |
Ahg910790 | Transducin/WD40 repeat-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|