Detail


ID : Ahg933310

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|933310|scaffold_401298.1
Sequence
ACCAAGGAAG AAGAAGAAAA ATGGAGGAGT TCTTAGATAA GTTACCGCAG ATGGATCTGA TGCGTTCGGA GAAGATGACG CTTGTTCAGC TTATCATCCC TGTTGAATCC GCTCATCGTT CCATCACTTA TCTCGGCGAA CTCGGACTCT TGCAGTTTCG CGACTTAAAT GCTGATAAAA GTCCATTTCA ACGGACATTT GCTAATCAGG TAAAACGATG TGGTGAGATG TCAAGAAAGC TGCGGTTTTT TAAAGATCAA ATTGATAAAG CTGGTCTAAG ATGTTCACCA CGCCATGAAA TAGAACCAGA TATTGAACTT GGAGATTTAG AGAGACAACT TGCTGATCAC GAGCATGAAG TACTGGAAAT GAATTCAAAC AGTGAAAAGC TTCGGCAGAC ATATAACGAA CTTCTTGAAT TCAAGATAGT TCTTGAAAAG GCAAGTGGTT TCCTTGTCTC AAGTAATGCT CATGCAATTG GAGAAGAAAC AGAACTACAT GAAAGCACCT ACTCGAATAA TGGTTTTATT GAGACTGCCT CTTTACTTGA GCAGGAAATG AATCCTGGAC CCTCCAATCA ATCAGGATTG AGATTTATTA GTGGAATCAT CAACAAAGAC AAACTTCTTA GGTTTGAAAG AATGTTGTTT CGTGCAACAA GAGGCAATAT GCTTTTCAAC CAAACAACCT CTGATGAGGA AATCATGGAT CCTTCAACAT CAGAAATGGT AGAGAAAGTT GTATTTGTGG TATTCTTTTC TGGGGAGCAA GCAAGGACAA AAATATTGAA AATATGTGAA GCATTTGGTG CAAATTGCTA TCCTGTCCCC GAGGATACAA CAAAGCAGAG GCAGCTTACT AGAGAAGTTT TATCCCGACT CTCTGATCTG GAAGCCACAT TAGATGCTGG AACCCGCCAT CGGAATAATG CCCTTAATTC GGTTGGCTAT AGCTTGACTA ACTGGATGAC CACGGTTCGG AGAGAAAAAG CTGTTTATGA TACTCTGAAT ATGCTAAATT TTGATGTAAC CAAGAAATGC CTTGTTGGCG AAGGTTGGTG CCCCACATTT GCTAAGACCC AGATTCATGA GGTCCTGCAG CGAGCCACTT TCGACAGCAA TTCACAGGTG GGCGTTATAT TTCATGTAAT GCAAGCAGTA GAATCACCTC CCACCTATTT CAGAACGAAC AAACTTACAA ATGCCTTCCA GGAGATTATT GATGCTTACG GTGTTGCGAG ATATCAAGAG GCAAACCCTG CAGTTTATTC AGTTGTCACA TATCCCTTTT TGTTTGCTGT TATGTTTGGT GATTGGGGTC ATGGTCTATG CTTGCTGCTA GGAGCGTTGT ATCTTCTTGC TCGTGAAAGA AAGCTGAGTA CGCAGAAACT TGGAAGCTTT ATGGAGATGC TTTTTGGAGG CCGCTATGTA ATCCTACTAA TGGCACTTTT TTCAATATAT TGTGGGCTTA TCTACAATGA GTTCTTCTCT GTTCCTTTCC ATATCTTCGG TGGTTCAGCT TACAAATGCA GAGATACTAC TTGTAGTGAT GCTTACACGG TTGGTTTAGT CAAGTACCGT GATCCATACC CGTTTGGCGT AGATCCTAGT TGGCGTGGAA GTCGTACAGA ACTGCCTTAC CTAAACTCTC TTAAGATGAA GATGTCTATT CTGCTGGGAA TTGCTCAGAT GAATCTGGGA CTAATATTAA GTTTCTTTAA TGCTCGCTTT TTCGGCTCTT CATTGGACAT AAGGTATCAG TTTATACCTC AGATGATATT TCTGAACAGC CTATTCGGTT ATCTTTCACT GCTCATCATC ATCAAGTGGT GCACTGGATC TCAAGCAGAC TTGTATCATG TAATGATCTA CATGTTTCTG AGTCCCACCG AAGAACTTGG AGAAAATGAG TTGTTCTGGG GCCAGCGTCC GCTTCAGATT ATGTTATTGC TTCTGGCATT CATCGCTGTC CCATGGATGC TTTTTCCGAA ACCTTTTGCC CTCAGGAAAA TTCACATGGA GAGGTTTCAA GGTCGCACTT ACGGGGTTCT CGGTACTTCT GAGGTGGATC TCGATGTAGA ACCAGACTCC GCTAGAGGAG GAGGCCATCA CGAAGAAGAG TTTAACTTCA GCGAGATTTT TGTACATCAA TTGATTCACT CCATAGAATT TGTTCTAGGT TCAGTTTCTA ACACAGCATC TTACCTTCGT CTTTGGGCTC TTAGTTTGGC TCATTCGGAA TTGTCGACAG TCTTCTATGA GAAAGTTCTT CTTCTTGCCT GGGGGTACGA AAACATTTTG ATCCGGTTAA TTGGAGTAGC GGTGTTTGCG TTTGCAACAG CGTTTATACT TCTGATGATG GAAACACTAA GTGCATTTCT CCATGCTCTG CGTCTTCACT GGGTAGAATT CATGGGGAAG TTCTTCAATG GAGATGGTTA CAAGTTCAAG CCATTCTCTT TCGCTTTAAT CTCAGATGAC GATGAATAAA AACCGTAAAA TCCTCAGCC
Length2509
Protein Sequence
Protein Residue
Map Locationscaffold_4: 12165719.. 12171375
Download Sequence
A.thaliana
AGI-codeAT2G28520.1
Descriptionvacuolar proton ATPase A1
TAIR curator summaryVacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network.
Alias[VHA-A1][vacuolar proton ATPase A1]
Gene coexpression
MR
MR Locus Description
5.47723 Ahg474047 stomatal cytokinesis defective / SCD1 protein (SCD1)
8 Ahg321074 RNA-binding (RRM/RBD/RNP motifs) family protein
13.5647 Ahg480280 MAK10 homologue
14.8997 Ahg481406 DNAJ heat shock N-terminal domain-containing protein
15.9687 Ahg481833 pumilio 3
16.4924 Ahg920897 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
17.8885 Ahg490794 Protein of unknown function (DUF3550/UPF0682)
20.7123 Ahg482029 ATP synthase protein I -related
21.9089 Ahg938787 seven in absentia of Arabidopsis 2
26.0768 Ahg488728 plant glycogenin-like starch initiation protein 6
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression