| Annotation |
|---|
| Description | jgi|Araly1|474178|fgenesh2_kg.1__4132__AT1G50500.1 |
| Sequence |
ACACCAAGGA CCGATCCGAT CTCCGTCGCC GGCGATCATC TCCGCCGTTT GCTGTTGTTC TTCCTCACTC TTCTCTGCTC CGCGTTCTCT CTCTCTCTCT TTCATACTCA TTTTTCATTT CGAGTGATTT TGATTTCATC ATACAAATTA CAAAGAGCCA TGGATAAGTC GAGTGCTTTA GAGTATATCA ACCAGATGTT CCCAACAGAG GCATCACTTT CTGGCGTTGA GCCCCTTATG CAAAAGATTC AGGGTGAGAT TCGGCGGGTT GATGCTAGCA TACTCTCTGC TGTTCGTCAA CAGAGTAACT CTGGAACTAA AGCTAAAGAA GATCTTGCTG ATGCTACACG TGCTGTGGAG GAACTCTCTC ATAAGATTCA AGAGATAAAA TCCAAAGCTG AGCAAAGTGA AGCGATGGTT CAAGAAATAT GCCGTGACAT TAAGAAGTTA GATTTTGCAA AGAAGAACAT AACCACGACC ATCACTGCCC TTCATCGCCT CACAATGTTA GTCTCTGCTG TTGAACAGCT TCAGGTGATG GCGTCAAAAA GACAATACAA GGAGGCAGCT GCACAGCTGG AGGCTGTAAA CCAATTATGT AACCACTTTG AAGCATACAG GGATGTTCCT AAAATCACGG AGCTCAGAGA AAAGCTTAAT AATATAAAGC AAATCCTTAA GTCCCATGTA TTTTCGGATT TTTTCAGTTT AGGTACTGGG AAAGAGACAG AGGAAACAAA TTTGCTACAG AAGTTATCTG ATTCTTGCTT GGTTGTTGAT GCTCTGGAGC CATCTGTGAG GGAAGAGTTG GTAAACAACT TTTGCAGCAG GGAGCTCACC TCATATGAAC AAATTTTTGA AGGAGCTGAA TTGGCAAAGT TGGATAAGAC AGAGCGGAGG TATGCTTGGA TAAAGCGTCG AATCCGAACA AATGAAGAAA TTTGGAAGAT TTTTCCTGCT TCTTGGCATG TGCCGTATAG GCTATGCATC CAGTTCTGCA AGCAAACAAG GAAGCAAGTA GAATCTATTC TGGTCAACAT GAAAGAGAAG CCAGTTGTAG CGATATTGCT TCTGGCACTA CAAAGGACAG TGGAGTTTGA AAAAGAACTT GAAAAGAAAT TTGGTGGTGG TGTTCCTACT AAAGATATTG AAGATGACAT TGAAGAAATT GGTACATGGG AAGATAATAG TCAGAATATA TCCAAAATCC GCAAGAAGTA TGAAAAGAAG TTTGCTGCTA GTCAAGAATC CGAGGAGAAT GGTTTTCAAC AGGAAAAGAC CGGAAACAAA GATTTATCTG TTACTGGAGC TGGGTTTAAC TTCCGTGGAA TGATCTCTTC CTGCTTTGAA CCTCATTTAA CTCCATATAT TGAGTTGGAA GAGAAGACAC TTATGGATGA CCTGGAGAAA ATTGTTCAGG AGGAAACATG GGATATTGAG GATGGAAGTC AAAATAATGT TTTATCTAGC AGCACACAGC TGTTTTCCAA TATAAAGAAG AGCTTGAAAC GTTGTAATAC TCTCAGTAAG AACCAGACTT TATTCAATTT GTTCAAGGTC TTTCAACGAG TTCTGAAGGC CTATGCTACA AAGCTATTTG GTAAGCTCCC AAAAGGAGGC ACTGGTATCG TTGCCGCAGC CACAGGCATG GATGGACAGA TAAAGGTCTC AGAGAGAGAT GAAAGGGTGA TATGCTACAT AGTTAATTCT GCTGAGTATT GCCACAAAAC ATCTGGTGAA CTGGCAGAGA ACGTCTCAGA AATTATTGAC CCACATTATG CTGATGGTGT AGACATGTCA GAGGTCCAGG ATGAATTTTC AGCCGTCATA ACAAAAGCGT TGGTAACGCT GGTCCTTGGA TTTGAGACGA AATTTGACAC AGAAATGGCA GCGATGACAC GTGTTCCTTG GAGCACACTT GAGAGTGTGG GTGACCAGTC TGGGTACGTG AATGGAATAA ATACAATCCT TAGCGGCAGC ATACCTGTCC TCGGGAAACT TCTAACACCA GTTTACTTCC AGTTTTTCCT CGACAAGCTG GCATCATCCC TCGGACCACG GTTCTATGCT AATATTTTCA GATGCAAGCA ACTATCCGAA ACTGGAGCTC AACAGATGTT ACTGGATACG CAAGCCGTGA AGTCGATTCT ACTAGAAATT CCTTCCCTTG CCAGACAGAC TTCAACTGCT GCCAGCTATT CCAAATTTGT GAGCCGTGAA ATGAGCAGAG CTGAAGCACT CCTTAAGGTC ATACTATCCC CAATCGATTC AGTGGCAGAC ACTTATCGTG CACTGTTTCC GGAAGGAACA CCCATGGAGT TTCAGCGCAT CTTGGAACTT AAGGGTCTTA AGAAAGCTGA TCAGCAGAGT ATACTTGATG ATTTCAATAA GCATGGCCCA GGATTCACAC AACAGTCGGT TGCAGCGGCA ATGCCACAAC CGATGCCAAC CCCACCTGCA CCACCACTGG CAATCACTAA TCCGGCTACA GCTGCTGGGT TCATAGCAAA CAGCGAGGAT GTTTTAACCA GAGCAGCTGC TCTTGGCAGA GGAGCTGCAA GCACTGGCTT CAAGAAGTTC ATTGCTCTTA CGGAAGCTGC CAAAGACCGC AAAGATGGGC CTTTAAGGAG ACTCTTCAAC GCATGATTTG TTTCTTTTCT GCGTCATCTC AACTTTTGAC TTATGCAATT TCCACCTTTG TTTCCCTCTG TGTTTAAATG CACTTGTTTC TTTGTTTCCC TGGTTATGTG TATATCAGAG ATTCATAGTG AATAACGAGT TTTCTCAGGG TGCGGATGTA TCTTAGTTGT TTATTGCATT CTTTGTTGAG AAACGTTACG AACACTTTCT TGAACTAA |
| Length | 2858 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 25180819.. 25189074 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G50500.2 |
| Description | Membrane trafficking VPS53 family protein |
| TAIR curator summary | encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. |
| Alias | [ATVPS53][HIT1][VPS53][ARABIDOPSIS THALIANA VPS53 HOMOLOG][HEAT-INTOLERANT 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg476130 | SIN3-like 4 |
| 5.47723 |
Ahg486659 | Plant protein 1589 of unknown function |
| 6.63325 |
Ahg950495 | GTP-binding protein, HflX |
| 9.38083 |
Ahg923251 | NagB/RpiA/CoA transferase-like superfamily protein |
| 15.8114 |
Ahg486573 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| 16.8523 |
Ahg470771 | Transcription factor IIA, alpha/beta subunit |
| 19.8997 |
Ahg474459 | phosphoenolpyruvate carboxylase 1 |
| 22.0454 |
Ahg903984 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 25.6905 |
Ahg933625 | SHAGGY-related protein kinase dZeta |
| 29.4618 |
Ahg312852 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|