Detail


ID : Ahg476130

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|476130|fgenesh2_kg.2__1260__AT1G70060.1
Sequence
ATGGTTGGAG GAAGTAGTGT GCAGAAGCTA ACTACTAATG ATGCACTTGC GTATCTTAAG GCTGTGAAGG ATAAGTTTCA AGATAAACGT GATAAATACG ATGAGTTTCT TGAGGTTATG AAAGATTTTA AAGCTCAGAG AGTTGATACT ACTGGTGTTA TCTTAAGGGT GAAAGAACTA TTCAAGGGGA ACAGGGAACT GATTTTGGGG TTCAATACTT TCTTGCCAAA GGGTTTCGAG ATAACTCTCC GACCCGAGGA TGACCAACCT GCTGCGCCAA AGAAGCCTGT TGAGTTTGAG GAAGCTATTA GTTTTGTCAA CAAGATTAAG ACAAGGTTTC AAGGCGATGA TCGTGTATAC AAATCGTTTT TAGACATTTT AAACATGTAT AGAAAGGAAA ACAAGTCCAT TACTGAGGTC TATCAAGAGG TGGCTATCCT TTTTCGGGAC CATCACGATT TGCTTGTGGA GTTCACTCAC TTTCTCCCTG ATACTTCAGC AACTGCATCT ACTAATGATT CTCTAAAAAT GCCAGTACGT GATAGAGGCA TTAAGTCTCT TCCCAACATG CGTCAAATAG ATCTTGATAA GAAGGACCGG ATTATTACTT CGCTTCCTGA CCGTGCCCTC AAAACCGAAC ATATGGACGT AGACCATGAG AGATCTTTGT TGAAAGATAG TAAAGAAGAA GTGAGACGCA TTGACAAAAG GAATGATTAC ATGGATGACA GAGATAGGAA AGATTACCGA GGTCTTGAAC ATGATAGCCA TAAAGAGCAT TTCTTCAACA ACAAAAAGAA ATTGATTCTA AAGGATGATG ATTCTGCTGA AATGTCAAAT CAAGCTAGGG AAGGAGACAA GTTTTCTGGA GCCATTCCCA GTTCATCTAC TTATGATGAA AAAGGTGCTA CTCTTTATGT GATGACAGGT CATAGCCAAG AACTTGCTTT TGTTGATAGA GTGAAGGCAA AGCTTGATAC CGCGGAAAAC CAGGAGTTCT TACGATGTCT TAATCTCTAT TCAAAGGAGA TAATCAGCCA GCCAGAATTG CAATCTTTGG TGAGCGATTT AATTGGAGTA TATCCAGACC TTATGGACGC CTTCAGAGTT TTTTTGGCTC AGTGTGACAA GAATGATGGA TTACTCTCTG GTATCGTGTC TAAGAGTAAG TCTAGCTATT TTTGTGATGT TGCTCTGATT GCTGTGACTA TAGAATCCTT GTGGAGTGAA GGCAAATGTC CTCAACCTAC TAAGTCACAG GACAAAGATA CAGACCGAGA ACGTGAAAAG ATTGAAAGGT ATAGAGAAAG AGACCGCGAG AAGGAGAGGC TTGAAAAGGC GGCAGCGAGT CAGAAATGGG CTAAACCTAT CAGTGAGCTA GATCTCTCGA ACTGTGAACA GTGTACACCT AGTTATCGGC GACTTCCAAA GAATTATCCA ATTCCTATAG CAAGCCAAAA AATGGAGATT GGTAGCCAAG TGCTTAATGA TCATTGGGTC TCCGTCACTT CAGGAAGCGA AGATTATTCA TTTAAACACA TGCGTAAGAA CCAGTATGAA GAGAGCCTAT TCAAATGTGA AGATGACAGG TTTGAGCTAG ACATGTTATT AGAGTCTGTG ATCTCTGCTA CGAATAGAGT GGAAGAGTTA TTGTCTAAGA TTAACAGTAA TGAATTGAAA ACCGACACTC CCATCTGCAT CGAGGATCAC CTCACAGCTC TAAACCTAAG ATGCATAGAA CGGTTATATG GTGACCACGG GCTCGATGTG TTGGATTTGT TAAAGAAGAA TGCATATCTT GCTTTACCGG TAATACTAAC CCGTTTGAAA CAAAAGCAAG AAGAGTGGGC AAGGTGTCGT ACTGAGTTTA ACAAAGTCTG GGCTGACATA TATACAAAGA ACTACCACAG GTCGCTTGAT CATCGCAGTT TTTATTTCAA ACAGCAGGAT TCAAAGAATC TGAGTACAAA AGCATTGCTG GCAGAGATAA AAGAGATCTC TGAAAAGAAG CGAGGCGAAG ATGATGCACT TCTTGCTCTT GCGGCTGGAA ATAGACGAAC CATTTCTTCC AATATGAGTT TTGATTATCC GGATCCTGAT CTTCACGAAG ATTTGTATCA GCTGATCAAG TATTCATGTG GAGAAATGTG TTCAACAGAA CAGTTAGATA AGGTAATGAA GGTATGGACA GAATTTTTGG AACCAATATT TGGTGTTCCT TCTCGCCCTC AAGGTGCCGA AGACCGAGAA GATGCTGTCA AGTCTACGAA CCAAGACCGA GAAGATGCTG TCAGTCCTCA AAATGGAGCT AGTATTGCCA ACTCTATGCG TTCAAATGGC CCTCGAAAAG GAAATGAAAG TAATCAAGTG CGGCAAGCTA GTGAGTTGGA TAAAGATGTC ACTTCTAGTA AAACCTCAGA TGTCTTATTA TCATGTGACA ACAACACTCA GAATGATAAA ATGCCGAAGA ATCTGACCAC ACCTGACGAA AGACCGGAAA CCAAACAAGC TGTTTCTATT GAATGTGCCC ACAACTCAAA TGCACTGCCT GTGGATGGAT TGTTACCTCA AAGGAATGGA AAAATCAGCA ATTTATCCAT TGCCGATGAT GAGTTGTATC CTTTCCTTTT ATACTCGCCA GGGCTTAGCA ATAGTAATCC AAAACCTAGT GCATTAACCA GTGGAACGGA GGAGTTGAAG CCGAATCACG TAAATGGGCC ACGCGTAGAG ATTGGCGACA ACCGAGTAAT TCCAAATGGG ACATTGGCAG AAGGGTTCGC TGGGGAAACC AAAGTCGAAA GAGAGGAGGG TGAACTTTCT CCAACAGGAG AGTTTGAGGA AGATAATTTT GCAGTTCATG GAGAGAATGA CATGGAGGCT CTCAGCAAAA GTAAGGAGAA TGATGCTACT GCAGATGATG AAGGTGATGC AAGTGCTCCA AGATCATCAG ATGGCAGCGG AAACACATCT CAGAACGGTG ATGTTTCTGG AACTGACTCT GGTGATGGTG AAGATTGTTA TCGCGAAGAT GATATGGACC ATAATAAGGC AGAAAGCGAA GGTGAGGCTG AAGAAGGTAT GTCTGATGCC CAGGATGATA CTGAAGGAGA TAGGCCTGTG TTGTCCATTT CAGTAAAAAA CCTGCTACAT GTGAAACCTC TTGCAAAGTA TGATCCTCCA GCTTTGCGCG ATAAGGACAA AGATGATTCT CGGAAGAACT CTCAAGTCTT TTATGGGAAT GATTCTTTCT ATGTTCTTTT CAGGCTTCAT CAGATTTTGT ATGACAGAAT ATTATCAGCA AAAGTCAATT CATCATCTCC AGATAGAAAG TGGAAGACCT CAAATCCAAC AAACCCCGCT GATTCGTACG CCAGCATTAT GGATGCTCTC TACAATTTGC TCGATGGTAC ATCCGATAAT TCGAAGTTTG AAGATGATTG CCGAGCAATT ATTGGGACAC AGTCATATGT TCTCTTCACA TTAGACAAAC TGATCTACAA GCTCATCAAG CATCTCCAAG GAGTAGCAGC TGATGAGATG TACAACAAAT TACAACAGTT ATATGCTTAC GAGAAATCCA GAAAGCCTGA AAAGTTTCTC GATGCTGTTT ATTACGAAAA TGCTCGTGTG CTTCTTCCCG ATGAGGATAT ATACCGCATT GAATGTGAAC TATCGACACC AAGCAAACTC TCTATTCAGC TTCTGGACTA TGGACATGAT AAGCCTGATG TGACATCCAT ATCCATGGAC CCAACTTTTG CAGCTTACCT CCACAATGTA TTCCTTTCCT ATCAACCTAA TGCAAAAGAG AATCCCCGAA TCTATTTGAA ACGGAATAAG CGTAAAAATG GTGGTGACGA TGAACTCTGC ACCACAGATG GAGTTAAGAT TATTAACGGT TTGGAATGTA AGATAACCTG CAGTTCTTCA AAGGTCTCCT ATGTATTAGA CACAGAGGAT GTGTTACATC GTTCTAAGAG GAGGAAATTT TTGAACCAAA GCGGTTTACC ACTCAGACAG GATTCTGTTT GCAGTGGTTC TTTAATCAGG CAAAGGAGAA TACAAAGATA CCAAAAACTT CTCACTGGCC AATAACATCT CACCTACCAC CAGCAAACAC TCGGGAATAG AGCAACGTCG CACTCTTTTG GAGACAAAAA GGTTGCCATA CTCAGCGTTG AGCTTTGTCA GAAGAGAGGA AATGTAAGAT GGCTCTTAAT TACTTGTGTT ACTGCCTCTG GTCCCTGTTG TATCCTCACA GAAAATAAAA AGGGAGGGAG GGGAAGATCG AAGGATTAAC TGCCCAAGCC TTCAAGTCTT GTTTCCCATA ATTGTGTACA TAAACTTTTT GTATGTTGTT GTAACATTAT TAACTCAAAT TTCTTCTTTG TTAACTCCTA TTCTTTCCAA CATTAATCAT GCACCTCAAT GAAGAATTTG TTCT
Length4444
Protein Sequence
Protein Residue
Map Locationscaffold_2: 13346675.. 13352864
Download Sequence
A.thaliana
AGI-codeAT1G70060.1
DescriptionSIN3-like 4
TAIR curator summaryEncodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
Alias[SNL4][SIN3-like 4]
Gene coexpression
MR
MR Locus Description
1 Ahg474178 Membrane trafficking VPS53 family protein
6.7082 Ahg470771 Transcription factor IIA, alpha/beta subunit
14.0712 Ahg470748 Calcium-dependent lipid-binding (CaLB domain) family protein
17.4356 Ahg473263 multidrug resistance-associated protein 1
18.5742 Ahg478716 proteasome activating protein 200
19.1833 Ahg893964 dicer-like 4
19.4422 Ahg473945 calcium-dependent lipid-binding family protein
20.2978 Ahg486573 Calcium-dependent lipid-binding (CaLB domain) family protein
26.6083 Ahg474047 stomatal cytokinesis defective / SCD1 protein (SCD1)
27.4955 Ahg929571 lipoamide dehydrogenase 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression