| Annotation |
|---|
| Description | jgi|Araly1|475338|fgenesh2_kg.2__468__AT1G59750.1 |
| Sequence |
TAGCCAAAGG GTTCGTGTCG GCTTCAACCA AACACTGACG GTGTGTGTAT ACACCTTTAC ATACACACCT TTATCTCTCA CATCTTCCCA AATCAATCTT CTACTGTTTT CTTTTTTCCT CTTCTTACAT TATTTTTGAC ACCAATTCTC AGTTTCTCTC TATCCCCTTT CTGGGTTTTG TTTGAACCCT AGCTCGCTTT GGATCCAGTG GTTTTAAGTT AAAGGTAAAT TTATCGAGGT TAAGGATTCC AAATGGCAGC TACCACTCAT TCATCTGTAA AACCTGGAGG AGTTTTAAGT GATGCTTTAT GTAGGGAGCT CTGGCATGCC TGTGCTGGAC CTCTTGTAAC GCTACCTCGT GAAGGGGAAC GAGTTTATTA TTTCCCTGAA GGCCACATGG AGCAGCTCGA GGCATCAATG CACCAAGGTT TGGAGCAACA GATGCCTTCC TTCAATCTCC CATCTAAGAT TCTCTGTAAA GTGATCAACA TCCAGCGCAG GGCAGAGCCC GAGACTGATG AAGTATACGC GCAAATAACC TTATTGCCAG AACTGGATCA AAGCGAACCA ACCAGCCCAG ATGCCCCTGT TCAAGAACCT GAAAAGTGTA CCGTACATTC ATTTTGCAAG ACACTAACTG CTTCAGACAC AAGCACACAT GGTGGATTCT CTGTGCTACG GCGACACGCA GATGATTGTC TCCCACCCTT GGATATGTCC CAACAACCAC CGTGGCAAGA ATTGGTTGCA ACTGATCTCC ACAATAATGA ATGGCATTTT AGGCACATTT TCCGAGGCCA ACCAAGGCGC CATTTGCTAA CAACTGGATG GAGTGTTTTT GTTAGCTCGA AGAAACTAGT GGCTGGTGAT GCTTTCATAT TCTTAAGGGG TGAGAATGAA GAGCTCCGAG TTGGTGTTAG GCGGCACATG AGACAACAGA CTAATATCCC GTCATCTGTC ATTTCAAGTC ATAGCATGCA TATTGGGGTC CTTGCGACTG CAGCTCATGC CATTACAACA GGGACAATCT TTTCTGTCTT CTACAAGCCC AGGACAAGTA GGTCAGAGTT TATTGTGAGC GTCAATAGAT ATCTCGAAGC TAAGACCCAG AAGCTGTCTG TAGGCATGCG TTTCAAGATG AGATTCGAGG GTGAAGAAGC TCCCGAGAAA AGGTTCAGTG GCACAATAGT TGGTGTTCAG GAAAACAAGT CTTCGGTCTG GCATGATTCT GAATGGAGAT CGCTAAAGGT TCAATGGGAC GAACCCTCAT CTGTATTTCG TCCTGAAAGA GTTTCACCTT GGGAACTTGA GCCCCTAGTT GCAAATAGTA CTCCTTCTTC ACAACCTCAG CCTCCACAAA GGAACAAACG ACCGAGACCT CCCGGTTTAC CTTCACCAAC CACCGGTCCA TCTGCTCCTG TTACTCCAGA TGGTGTGTGG AAATCCCCGG CAGACACTCC TTCCTCAGTG CCATTATTCT CTCCTCCTGC CAAAGCTGCT ACGTTTGGTC ATGGTGGGAA CAAATCATTT GGAGTATCTA TTGGATCAGC CTTTTGGCCC AGCCATGCAG ATAGTGCAGC TGAATCCTTT GCTTCAGCGT TTAACAATGA ATCTACTGAA AAGAAGCAAA CTAATGGAAA TGTCTGTAGG CTTTTTGGGT TTGAGCTAGT TGAAAATGTT AATGTGGATG AATGTTTCTC TGCTGCCTCT GTGTCCGGTG CTGTCGCTGT AGATCAACCT GTCCCATCCA ATGAGTTTGA CTCTGGTCAG CAGTCTGAGC CGTTAAACAT CAACCAATCT GATATTCCTT CGGGGAGTGG TGACCCTGAG AATTCCTCTT TGAGGTCTCC TCAAGAATCA CAAAGTAGAC AGATACGTAG CTGCACAAAG GTGCACATGC AAGGCAGTGC AGTAGGCAGA GCTGTTGATT TGACAAGGTC AGAGTGTTAC GAAGATCTAT TCAAGAAGCT GGAGGAGATG TTCGAAATCA AGGGTGAACT CTTAGAATCT ACCAAAAAAT GGCAAGTTGT TTACACCGAT GATGAAGATG ACATGATGAT GGTTGGTGAT GATCCATGGA ATGAGTTCTG TGGAATGGTG AGAAAGATAT TCATCTACAC ACCTGAGGAA GTGAAGAAAC TTTCACCGAA GAACAAACTC GCAGTCAATG CAAGGATGCA GCCCAAAACT GATGCAGAGG AAAATGGGAA TACAGAGGGC AGGTCATCAT CTATGGCTGG ATCAAGATGA GTATATCACT GTTATGCTTT AAATGTACTT GCCACGTAGG AAAGATGAAA GCAGAAGCAA GAGATCGTTA GACAATGTGA AAATTGAGAT GTCTGTGTAT AGCAATGAAG TTTTATGTCT TCAGGTCCCA TGAATTCACT TAGATGCAAT GTGTTTTGAG GAGTTGTGTA GCTTTTGTAC GGGAAAATGT GGAAATTAAG ATTCACGTCT TGTTCTAC |
| Length | 2468 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 3379101.. 3384065 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G59750.1 |
| Description | auxin response factor 1 |
| TAIR curator summary | Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions. |
| Alias | [ARF1][auxin response factor 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.6771 |
Ahg489669 | Calcium-binding EF-hand family protein |
| 10.7238 |
Ahg473244 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 |
| 11.4891 |
Ahg493698 | auxin response factor 8 |
| 14.4222 |
Ahg483660 | Plant protein of unknown function (DUF641) |
| 17.6068 |
Ahg936861 | |
| 18.735 |
Ahg342637 | transmembrane kinase-like 1 |
| 18.9737 |
Ahg949102 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein |
| 20.445 |
Ahg471307 | CYTOCHROME P450 51G1 |
| 21.5639 |
Ahg496159 | ROP interactive partner 5 |
| 22.2711 |
Ahg492523 | Protein of unknown function (DUF604) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|