| Annotation |
|---|
| Description | jgi|Araly1|476259|fgenesh2_kg.2__1389__AT1G71270.1 |
| Sequence |
AGCTGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAC TCTAATGGCG GACTCAAACT GATTTCAGAC TCAAAAGCAT TCTGTTTTCG TTCTCTACTT GAAGATATTT CGAATCTTAA TCTCCTTAGG GAGATGTCAG ACATTTCCAT TGACGCATTG GGCCAAACTG TGGGCGACTT CAGTAATCAT GAGAAAATTG GATTTGATTT AGGAGCATTT GTCGGAGACT TGGCTTTTGA AGAAGATTCA GGCAGTGAGG ATATATCATT GGAAGGGCTT CAACAAGAAC TTGAAGAATG TGAAAGTGAT GAGGTTGTTT CCAATATACT ATCCAGTGGT GCCAAACTTA GAGAATATGC GAAAGGGGTT GAAAACAATC TACGGAAGGT CGAATTGGAT TCAATTGAGG ATTACATAAA AGAAAGTGAC AACCTTGTCT CACTTCACGA TCAGATTCGT GACTGTGACA GCATCTTGTC ACAAATGGAA ACTCTCCTCA GTGGATTTCA GGAAGAGATT GGTTCTATAA GTTCAGACAT AAAGATTCTT CAAGAAAAGT CAATGGACAT GGGTTTGAGA TTGAAAAACC GCAGGGTGGC TGAATCAAAG CTAGCAAAAT TTGTCGAAGA CATTATAGTG CCACCAAAGA TGATAGATGT AATTGTCGAT GGAGAGGTGA ATGAGGAGTA TATGAAAACG CTTGAAATTC TGAGTAAGAA GCTGAAATTT GTAGAAGCAG ATCAAGCAGT TAAAAGTTCC AAAGCGTTAA AAGATGTAGA GCCTGAGCTC GAAAAGCTCC GGCAAAAAGC TATTTCCAAG GTGTATGATT TTATTGTCCA GAAGCTTATA GCCCTGAGGA AACCCAAAAC AAACATTCAG ATTCTTCAAC AGAGTGTGTT ATTAAAGTAC AAGTATATTA TCTCCTTCCT CAAAGAACAT GGAAAAGAAG TGTTTATGGA TGTCCGTGCT GCATACATTG ATACCATGAA CAAGGTGTTA AGTGCACATT TTCGTGCTTA TATTCAAGCA CTTGAGAAAC TACAGTTAGA TATAGCCACC GCATATGACT TAATTGGGGT AGAGACTAGA ACCACGGGCC TCTTCTCAAG AGCTAGGGAA CCACTAAAGA ACCGCTCTGC CGTTTTTGCT TTGGGTGAGA GGATAAAAAT TATAAAGGAA ATTGATCAAC CTGCTTTGAT CCCGCACATA GCCGAAGCCA GCTCTCTCAA ATATCCTTAT GAAGTGCTCT TCAGGAGCTT GCACAAGCTA CTTATGGATA CAGCTACTTC TGAGTATATA TTTTGTGATG ATTTCTTTGG TGAAGAGTCC ATATTCTATG AAATTTTTGC GGGTCCATTT TCTGTCATCG ATGAGCACTT CAATCCCGTT CTTTCAAACT GTTTTGATGC TATCGGCCTG ATGCTTATGA TTCGCATAAT ACACCACCAC CAGCTTATCA TGTCTCGCCG GAGGATTCCA TGCCTGGACT CATATCTGGA CAAGGTTAAT ATTTCTTTGT GGCCTCGTTT CAAGATGGTG TTTGACTCAC ACCTCAGCAG TCTGCGAGAT GCAAACATTA AGACATTATG GGAAGATGAT GTTCATCCTC ACTATGTCAT GAGACGTTAT GCTGAATTCA CGGCTTCGTT TATTCACCTG AATGTTGAAT ATGGAGATGG GCAGCTTGAT ATAAATCTGG AGCGGTTAAG AATGGCTGTA GATGGCTTGA TTCTCAAGCT TGCAAAGTTG TTCCCAAGGC CAAAGCAGCA AATTGTGTTT CTCATAAATA ACTACGATAT GACAATCGCT GTGTTGAAGG AAGCTGGACC AGAAGGTGGC AAAATTCAAA TGCATTTTGA GGAATTGCTA AAGAGTAACA CTTCATTATT TGTGGAAGAA CTGCTGGTGG AGCATTTCAG TGATTTGATC AAATTCGTGA AAAGTCGAGC CTCTGAGGAT TCAAGTTCAA ATCCAGAGAG GTCCATCACA GTTGCGGAAG TAGAGCCACT GGTGAAAGAC TTTGGAAGCA GATGGAAGAC AGCGATTGAG TTGATGGACA AAGATATCAT AACTTCCTTC AGTAACTTCT TGTGTGGTAT GGATATTTTG AGAGCTGCAT TGACACAACT ATTGCTCTAT TACACAAGGC TCACAGACTG CATCAAGAAG ATGGATGGTG GATCTGCTCT GAACAGGGAT CTTGTCTCCA TTCAATCTAT TATGTACGAG ATCAGGAAAT ACTCCAAGAC TTTCTGAAAG ATAACATATG TGGCTCCTTA ATGAAGAGTA TGTAAGATAA GTCAAACCTT TCAAAGTGAA ACTTAAGCCA GTCTTCTGGG TTATGATGTA TCTTTCAAAC CAGTAAGATA GAGTTCCTCC AATGTCTGTC TTTTGCTA |
| Length | 2398 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 13976482.. 13982944 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G71270.1 |
| Description | Vps52 / Sac2 family |
| TAIR curator summary | Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network. |
| Alias | [ATVPS52][POK][TTD8][ARABIDOPSIS THALIANA VPS52 HOMOLOG][POKY POLLEN TUBE][T-DNA TRANSMISSION DEFECT 8] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4 |
Ahg918735 | Leucine carboxyl methyltransferase |
| 4.24264 |
Ahg470500 | dentin sialophosphoprotein-related |
| 4.89898 |
Ahg897242 | Protein of unknown function (DUF626) |
| 5 |
Ahg332111 | FRAGILE HISTIDINE TRIAD |
| 6 |
Ahg487281 | SU(VAR)3-9 homolog 1 |
| 6.48074 |
Ahg479273 | tetraticopeptide domain-containing thioredoxin |
| 8.48528 |
Ahg478899 | Leucine-rich repeat transmembrane protein kinase |
| 12.1244 |
Ahg927067 | eukaryotic translation initiation factor 2 (eIF-2) family protein |
| 12.3693 |
Ahg938953 | farnesyltransferase A |
| 12.8062 |
Ahg319751 | Thioredoxin superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|