| Annotation |
|---|
| Description | jgi|Araly1|476336|fgenesh2_kg.2__1466__AT1G72050.2 |
| Sequence |
ATGGCGGAAG AAGCTAAAAT TGATATAAAG ACGTCGGCGA AGAAGGACAT ACGAAACTAT CTCTGCCAGT ATTGCGGAAT CAGCAGATCG AAAAAGTATC TCATCACTTC ACACATCCAA TCTCATCATC AGATGGAACT TGAAGAGGAA AGAGATGATG AAGATTGTGA GGTTGAAGAA GAGTCTTCAA GTAAACATAC TTGTCATGAA TGTGGTGCTG AGTTTAAGAA GCCTGCTCAC TTGAAGCAGC ATATGCAGAG CCACTCTCTC GAGAGACCTT TTACTTGCTA TGTGGATGAT TGTGCTACTA GCTATAGGAG AAAGGATCAT CTCAATAGGC ATCTTCTTAC ACATAAAGGG AAGCTCTTTA AGTGTCCGAA GGAGAATTGC AAGAGTGAAT TCTCAGTACA GGGCAACGTT AGTAGGCATG TTAAGAAATG TCATAGTAGT GGCGACAGTG ATAAGGACAC TACTGGTAAG GGCGATAGTG ATAAGGAAAA TGCTGGTAAT GGTGATAGTG GTAAAGACAA CACTGGTAAT GGCGATTCTC AACCCTCTGA ATGTTCAACT GGTCAGAAGA AGCTTGTCTG CAAAGAAATT GGTTGTGGGA AAGCCTTTAA GTATCCTTCA CAGCTACAAA AGCATCAGGA TTCTCATGTG AAATTGGACT CTGTGGAGGC TTTTTGTTCC GAGCCTGGGT GTATGAAGTA CTTTACAAAC GAAGAATGCC TCAAGGCACA CATAAGATCC TGCCATCAGC ACATCAACTG TGACATATGT GGCTCTAAGC ATCTTAAAAA GAACATCAAG AGACATCTAC GGACCCATGA TGAAGATTCC TCACCAGGAG AATTCAAGTG TGAAGTTGAG GGTTGCTCTT CAACTTTCTC AAAGGCTTCT AATCTTCAGA AACACGTGAA AGCAGTGCAT GAGGATTTAC GTCCCTTTGT CTGCGGTTTT CCAGGTTGTG GCATGAGATT TGCTTACAAA CATGTCAGAA ACAATCACGA GAATTCTGGA TGTCACGTTT ATACCTGCGG TGATTTTGTT GAAACTGATG AAGATTTCAC CTCAAGACCG AGAGGTGGAC TAAAGAGGAA GCAAGTTACA GCGGAAATGC TGGTACGAAA GAGGGTCATG CCTCCCCGGT TTGATTCAGA AGAACATGAG ACTTGCTAGA AGTATGTACA AAAGAAGATC CAGAACTGCA GACGATAATA GTATGGTGTT TTGTGTAAAG TTCTTTTTGT TTGTGTGTTA GAAAGAAATA TAGAACGACA ATAGTAAGTA GTAATCACGG CTTTAATGTA TT |
| Length | 1312 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 14312425.. 14314638 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G72050.2 |
| Description | transcription factor IIIA |
| TAIR curator summary | Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm. |
| Alias | [TFIIIA][transcription factor IIIA] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg934847 | |
| 5.2915 |
Ahg916256 | KRR1 family protein |
| 10.583 |
Ahg888512 | high mobility group B5 |
| 13.6748 |
Ahg912885 | RNA polymerase I specific transcription initiation factor RRN3 protein |
| 16.6132 |
Ahg496396 | DEAD box RNA helicase (PRH75) |
| 17.0294 |
Ahg493213 | DEA(D/H)-box RNA helicase family protein |
| 18.3303 |
Ahg940041 | DnaJ domain ;Myb-like DNA-binding domain |
| 21.9089 |
Ahg491623 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein |
| 22.1811 |
Ahg927067 | eukaryotic translation initiation factor 2 (eIF-2) family protein |
| 26.8701 |
Ahg486216 | nuclear RNA polymerase A1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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