| Annotation |
|---|
| Description | jgi|Araly1|479572|fgenesh2_kg.3__2273__AT3G20475.1 |
| Sequence |
TTCATCTTCC CCAACGTCTC TGCTCTTTCC CTTCTCTCTA TCTCTCTCTC GTTCTAATCT GCGGCAATGG AGGAAATGGA AGACGCAGAA ACCGAACCAC AGGTTTATAT GGCTTGTATT CAGCATGGTC GGAGAGTTGG AGTTTCTTAC TACGACTGTA GTGTACGCCA GCTTCATGTG CTAGAAGTTT GGGAGGAAGA TTGCTCAGAT TTTACCTTCA TTAATATGGT AAAATATCAA GCGAAGCCAT CGATCATTTA CACAAGCACC AAAAGTGAAG AATCCTTTGT AGCTGCTCTG CAGCAAAATG ACGGAACTGA CGAGACTACC ATGGTGAAGC TGGTAAAGAG TTCAACATTC AGCTACGAGC AAGCGTGGCA CAGACTGGTT TATCTTCGAG TAACAGGAAT GGATTATGGG TTGAACATCA AAGAAAGGAT TTGTTATCTG AGTTCCATCA TGGATGTGGG TAGTGAAGTC CAAGTTCGTG TTAGTGGGGG CCTTCTTGCT ATATTAGAAA GTGAACGAAT TGTAGAAACC CTGGAACAAA ACGAATCTGG GAGTGCGTCA ATCGCAATTG ATTCAGTCAT GGAAGTACCA TTGAACAAGT TTCTTCATCT TGATGCGGCT GCTCACGAGG CTCTGCAGAT ATTTCAAACA GATAAACATC CAGGCCATAT GGGCATTAGC CGGGCAAAAG AAGGGTTCTC GGTGTTTGGA ATGATGAATA AGTGTGCCAC ACCAATGGGT AGACGCCTTT TAAGAAGCTG GTTTATGAGA CCAATTTTAG ATCTTGAAGT GTTAGATCGC CGTCTCAATG CTATTTCCTT TTTCATTTCT TCAGTAGAGC TGATGGCATC ATTGCGGGAG ACACTGAAAT CTGTGAAGGA CATTTCGCAT CTGCTCAAGA AATTCAACTC TCCGACGTCC CTCTGTACCA GTAACGACTG GACAGCTTTT TTGAAGAGTA TAAGTGCGCT CCTGCACGTG AATAAGATAT TTGAAGTTGG AGTTTCAGAA AGTCTCAGAG AACATATGAG ACGCTTCAAC TTGGACATTA TTGAGAAGGC CGGCTTATGT ATCAGCACAG AGCTAGATTA TGTCTATGAA CTGGTCATTG GAGTCATTGA TGTTACTAGA AGCAAAGAGA GGGGATATCA AACATTGGTG AAAGAAGGAT TCTGTGCTGA GTTGGATGAG CTGAGGCAAA TATACGAGGA GTTGCCAGAG TTTCTGCAGG AGGTTTCAGC GATGGAGTTA GAACACTTTC CTCATTTGCA TAAGGAAAAG CTTCCTCCTT GTATCGTCTA TATTCAACAA ATTGGGTACC TCATGTGCAT CTTTGGAGAA AAGCTTGATG AAACTGCACT TAATAGGCTT ACTGAATTTG AATTTGCGTT TTCCAATATG GATGGAGAGA CTCAGCGATT CTTTTACCAT ACCCCGAAGA CACGAGAGTT AGACAACCTT CTTGGAGATA TCTACCACAA AATTTTAGAT ATGGAAAGGG CAATTATTAG GGACTTGCTA TCACACACGC TTTTGTTCTC GGCTCACCTG CTGAAGGCAG TTAACTTTGT TGCAGAACTT GATTGCATTT TATCGTTGGC TTGTGTAGCC CATCAGAACA ACTACGTAAG GCCTGTCCTG ACAATAGAAT CATTGCTTGA TATTCGAAAT GGAAGGCATA TATTGCAGGA AATGGCTGTG GATACATTTA TCCCGAGCGA CACTGAAATC AATGATAATG GCCGAATTCA TATAATTACC GGGCCTAATT ACTCAGGAAA GAGCATATAT GTAAAGCAGG TGGCTTTAAT TGTTTTCCTA TCCCATATTG GAAGCTTTGT ACCAGCAGAT GCAACAACTG TTGGTTTAAC TGACAGGATC TTTTGTGCAA TGGGAAGCAA GTTCATGACC GCGGAGCAAT CTACATTTAT GATAGATCTG CATCAAGTAG GAATGATGCT CAGACAGGCA ACTTCAAGAT CTCTGTGTCT CGTAGACGAG TTTGGTAAAG GCACTCTTAC AGAAGATGGT ATTGGCTTGC TTGGTGGGAC AATTAGCCAC TTTGCTACAT GTACTGAGCC ACCAAGGGTT CTAGTGTGTA CGCACTTGAC TGAACTACTT AACGAGAGCT GCTTGCCTGT TTCTGAGAAG ATTAAATTCT ATACAATGAG CGTTCTTAGG CCAGACACAG AATCTGCAAA AATGGAAGAA ATTGTTTTTC TTTATCGGTT AATTCCGGGA CAAACTTTAC TGAGCTATGG TGAGCATCTT TGTGTTTGCG TTGGTGTCCC GGAGGAAGTC GTGAAGAGAG CAGCCATCGT GTTGGACGCC TTTGAGAGTA ACAACAACGT CGATAAACTA AGCCTTGACA AAATATCGTC TCAAGATCAA GCATTCAAGG ATGCTGTTGA CAAGTTTATG GAGTTTGACA TCGGTAAAGG TGACATCCGT GGCTTCTTTC AAGATATCTT CACTTCCTAA ACCCTCACTT AAAAGTCAAG ATCACCGAAT AGAAAATGTA ACCAACAACA GTAGATTTTT TAAA |
| Length | 2554 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 8414506.. 8421859 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G20475.1 |
| Description | MUTS-homologue 5 |
| TAIR curator summary | Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. |
| Alias | [ATMSH5][MSH5][MUTS-HOMOLOGUE 5][MUTS-homologue 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 13.2288 |
Ahg321788 | Chaperone DnaJ-domain superfamily protein |
| 21.4942 |
Ahg476896 | |
| 21.7715 |
Ahg916949 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 28.178 |
Ahg892895 | Splicing factor, CC1-like |
| 34.1174 |
Ahg481579 | proteasome family protein |
| 34.4093 |
Ahg929882 | MUTS-homologue 5 |
| 42.8486 |
Ahg478644 | SNF2 domain-containing protein / helicase domain-containing protein |
| 58.9915 |
Ahg908250 | Mannose-6-phosphate isomerase, type I |
| 60 |
Ahg918732 | RAS 5 |
| 60.5475 |
Ahg479026 | Peptidase S24/S26A/S26B/S26C family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|