| Annotation |
|---|
| Description | jgi|Araly1|478644|fgenesh2_kg.3__1345__AT3G12810.1 |
| Sequence |
ATTGACTTGG AATTTTCTAC ATCTATTTGC GCCGCTAGCT CGGGTTTCTT TCTGAAGCAG GCTCTTCTGG ATTAAAAAAA AAATCTCAAA ACCAAAGCTT CTTCCTTTTT TACAAATTCG TTCGTATCTC CCATTTTTTA TTTTTCTCGA TCTCCTATCA CATCATCTTA GTAAGAATGA AGTGAAGAGA TTTCAGAAAA ATCTAATCTT GTTCCCGTTC GATTCGAGGA AAACAAATTT CAGCTAGATT TGAGATTTGG AATCGAAAAT TACTGTAATG TTTTGGGTGA CGGAACCTAG TGATGAAATC TTTGCTTGGG TTTTTTTGCG CTGAAGTGGA AACCCTAATT TCTCGGGCTT TGTGTACTCG CAAACTTTGC ACTCTGCAGT CACTAGTCAT CTTCTTCGCT CTTTGAAGAT TTTGCTTAGA GGCGTTAGTA AATGGCGTCT AAAGGTGGGA AATCTAAACC TGATATAGTA ATGGCGTCCA AAGGTGGCAA ATCTAAACCT GATAATGACT CCAGAGCTAA ACGTCACAAG ACGCTCGAAG CTCCTAAAGA ACCACGTCGC CCGAAAACTC ACTGGGACCA TGTTTTGGAG GAGATGGCTT GGCTCTCAAA GGACTTTGAG TCTGAGAGGA AGTGGAAGCT GGCGCAGGCG AAGAAGGTTG CTTTGAGGGC CAGCAAAGGA ATGCTAGATC AGGCATCTAG GGAAGAAAGG AAGCTAAAGG AAGAAGAACA GCGGCTACGG AAAGTAGCTC TCAATATCTC GAAAGACATG AAAAAGTTTT GGATGAAAGT AGAGAAGCTG GTGCTTTACA AGCATCAGCT GGTACGCAAT GAGAAGAAGA AGAAGGCTAT GGACAAGCAA CTTGAATTTC TGTTAGGCCA AACTGAGAGG TACTCAACCA TGTTGGCCGA AAATTTAGTG GAGCCTTATA AACAGGGCCA AAATACTCCT TCAAAACCTC TACTAGCTAT CGAATCAAAA AGTGACGAGG AGAGGGCAGA ACAGATACCT CCAGAGATAA ATTCTTCTGC AGGTCTTGAA TCAGGAAGTC CTGAACTCGA TGAGGACTAT GATCTAAAAT CCGAGGATGA GACCGAAGAT GATGAAGATA CTATTGAGGA GGATGAAAAA CACTTCACCA AACGGGAAAG ACAGGAAGAG TTGGAAGCTT TGCAAAATGA AGTGGATCTA CCAGTTGAGG AGCTGCTCAG ACGTTATACT GCTGGAAGAG TTAGCCGAGA AACCAGCCCA GTAAAAGATG AAAATGTGGA CAATCTGGCC TCAGTTAGCC GAGAAACCAG CCCAGTAAAA GATGAAAATG AGGACAATCT GGCCTCAGTA GGTCAAGATC ATGGAGAGGA CAAGAACAAT CTTACAGCTT CTGAAGAAAC TGAAGGGAAC CCAAGTGTTC GTCGTTCTAA TGATAGCTAT GGCCATTTGG CAATATCTGA GACCCATTCT CATGACCTCG AACCAGGCAT GACGACTGCA TCTGTGAAGT CCAGAAAGGA AGATCATACC TATGATTTCA ATGATGAACT GGAAGATGTT GACTTTGTTG TTGCCACTGG TGAGGAGAAG GATGATGAGA CAACATTGGC TATCGAAGAG GAATTGGCGA AAGCTGATAA TGAAGACCAT GTGGAAGAGA TTGCTCTGCT GCAAAAAGAG AATGAAATGC CTATTGAAGT ACTACTTGCA AGGTATAAGG AGGATTTCGG GGACAAGGAT ATATCTGAGG ATGACTCTGA ATATTCATGT GCTCAATCTG AAGACTCTAT AGTAGACTCT GACGAAAATA GGCAGCAAGC TGATTCAGAT AATGAAAACG TTGATTCAAC AGAATGTAAG CCAGATCCAG AGCCTTGCTC AGAAAATGTT GAAGGCACAT TCCATGAAAT AACAGAAGAT AATGGTAAAG ATAGTAGTGA TAAAATTGCT GATGCAGCAG CAGCAGCAAG ATCTGCGCAG CCAACTGGAT TTACATACTC CACAACAAAA GTTCGAACGA AACTGCCGTT TCTACTCAAG CATTCTCTGC GTGAGTACCA ACACATTGGT TTGGACTGGC TTGTCACGAT GTATGAGAAA AGGCTGAACG GTATTCTGGC TGATGAAATG GGTCTTGGAA AGACAATTAT GACCATTGCT CTTCTAGCAC ACCTCGCATG TGATAAGGGG ATATGGGGTC CCCATCTGAT TGTGGTTCCA ACAAGTGTGA TGCTTAATTG GGAGACTGAG TTTCTTAAAT GGTGTCCTGC ATTTAAAATT CTCACCTACT TTGGTAGTGC AAAGGAGCGG AAACTCAAGA GACAAGGATG GATGAAGCTT AACTCATTTC ATGTATGCAT AACGACCTAT AGGCTAGTTA TTCAAGACAG TAAAATGTTC AAGCGCAAGA AGTGGAAATA TTTGATTCTT GACGAAGCCC ATTTAATTAA GAATTGGAAG TCTCAGAGAT GGCAGACACT ATTGAACTTC AATTCTAAAC GCAGAATTTT GTTGACTGGT ACACCACTGC AGAATGATCT TATGGAATTG TGGTCACTTA TGCATTTTCT GATGCCACAT GTTTTTCAGT CTCACCAGGA ATTCAAAGAT TGGTTCTGTA ACCCGATAGC AGGGATGGTT GAGGGACAAG AAAAAATCAA CAAAGAAGTT ATTGATCGCT TACATAATGT CCTCCGTCCT TTCCTTCTAC GGCGCCTAAA AAGGGATGTG GAGAAGCAAC TTCCTTCGAA ACATGAGCAT GTTATTTTCT GTAGACTGTC TAAGAGGCAA CGCAACTTGT ATGAGGACTT CATAGCGAGC ACAGAAACAC AGGCTACGCT TAACAGTGGA AGCTTTTTTG GGATGATAAG TATCATAATG CAGTTGCGGA AAGTTTGTAA TCATCCTGAT CTCTTTGAGG GTCGTCCTAT TGTAAGTTCT TTTGATATGG CTGGCATTGA TGTGCAGTTG AGTTCAACGA TCTGTTCGCT GCTTTTGGAA AGTCCGTTTT CCAAGGTTGA TCTTGAGGCT TTGGGATTCT TATTCACCCA TCTTGATTTT TCGATGACTT CTTGGGAAGG AGATGAGATA AAAGCTATTT CAACACCCTC AGAATTAATC AAACAGCGTG TGAACTTGAA GGATGATATG GAAGCAATCC CTTTGAGTTT GAAAAACCGC AAAAATCTGC AAGGGACAAA TATTTTTGAA GAAATTCGTA AGGCTGTTTT TGAGGAAAGG GTTAAAGAAA CTAAGGATCG GGCAGCAGCC ATTGCCTGGT GGAATTCTTT GAGATGCCAG AGAAAGCCGA CTTACTCTAC ATCTCTAAGA ACTCTTTTGA CCATTAAGGG TCCTCTTGAT GATATACACC ATCTTAAAGC TAACTGTTCA TCTTACATGT ATTCCTCAAT CCTCGCTGAC ATAGTTCTTT CACCGATCGA GCGTTTTCAG CAAATGATTG AGCTAGTTGA AGCTTTCACA TTTGCGATTC CAGCTGCACG AGTGCCTTCA CCTGCTTGCT GGTGCAGCAA AAGTGACTCT CCTGTTTTTC TTAGTCCATC ATACAAGGAG AAAGTTACAG ATTTATTGTC ACCTCTTTTA TCTCCGATTA GACCTGCAAT CGTTAGGAGA CAAGTATATT TTCCAGATAG GCGACTGATA CAGTTTGATT GTGGTAAGCT GCAGGAGCTT GCTATGTTAT TGAGGAAATT AAAATTTGGG GGTCACAGAG CGTTGATATT CACGCAAATG ACCAAGATGC TTGACGTCTT GGAGGCTTTC ATTAATTTAT ATGGTTATAC CTACATGCGT CTTGACGGCT CTACTCCACC AGAAGAGAGG CAGACATTAA TGCAGCGGTT TAATACAAAT CCCAAGATCT TTCTTTTCAT TTTGTCAACC CGTAGTGGGG GCGTTGGCAT CAACCTTGTG GGTGCGGACA CAGTTATATT CTATGACAGT GACTGGAATC CTGCTATGGA TCAACAAGCT CAAGATCGCT GCCACAGGAT AGGTCAGACA CGTGAAGTGC ATATTTACCG GTTGATAAGT GAGAGCACCA TTGAGGAGAA TATCTTAAAG AAAGCAAACC AGAAGCGTGT GCTTGATAAC CTAGTAATTC AAAACGGAGA GTATAACACC GAATTTTTCA AGAAGCTCGA TCCAATGGAA TTGTTCTCTG GACATAAGAC TCTGACTACA AAGGATGAAA AGGAAACAAG CAAAAATTGC GGGGCGGAGA TACCTCTGTC AAATGCAGAT GTTGAGGCTG CTTTAAAACA GGCAGAAGAT GAGGCAGATT ATATGGCTCT TAAAAGAGTA GAACAAGAAG AAGCTGTGGA CAATCAAGAG TTTACAGAAG AACCTGTAGA GAGACCAGAA GACGATGAGC TAGTAAATGA AGATGACATA AAGGCTGATG AGCCTGCTGA TCATGGTTTA GTTGCAGCCG GGTTGGCCAA AGAAGAAATT TCATTGTTAC ATAGTGATAT CAGGGATGAG AGAGCTGTAA TCACTACTTC AAGCCAAGAA GATGACGCTG ATGTGTTAGA TGATGTCAAG CAAATGGCTG CAGCAGCCGC TGATGCTGGA CAAGCTATCT CATCTTTTGA GAATCAGCTA CGTCCTATTG ATAGATATGC GATTAGATTT TTAGAGCTTT GGGACCCCAT CATTGTTGAG GCTGCAATGG AAAATGAAGC GGGATTTGAA GAGAAAGAAT GGGAACTTGA CCACATTGAG AAGTACAAGG AGGAAATGGA AGCTGAGATT GATGATGGGG AAGAGCCTCT TGTTTACGAG AAATGGGATG CTGATTTTGC AACCGAGGCA TACAGGCAGC AAGTGGAAGT CTTAGCTCAG CACCAGTTGA TGGAAGATTT GGAAAATGAA GCTAGAGAGA GGGAAGCTGC AGAGGTGGCT GATATGGATT TGACACAGAA CGAAAGTGCT CATGTACCGA AGCCTAAGAA GAAGAAAAAG GCGAAGAAAG CCAAATATAA ATCCCTGAAG AAAGGATCAC TGGCTGCCGA AGCAAAACAT GTGAAGTCAG TTGTGAAAAT TGAAGATTCG ACTGATGATG ATAATGAAGA ATTCGGCTAT GTGAGTAGCA GTGACTCAGA TATGGTTACA CCGCTTTCGC GGATGCATAT GAAAGGCAAG AAAAGAGATT TAATTGTTGA CACTGAAGAA GAGAAAACCT CGCAGAAGAA AGCAAAGAAG CACAAGAAGT CTATTCCGAA TTCAGATATC AAATATAAGC AAACAAGTGC TCTACTTGAG GAACTGGAAC CATCAAAGCA GTCTGACAGT ATGGTTGTTG ATAATGAATT GAAACTGACG AACAGGGGTA AAACTATAGG GAAAAAATTC ATCACTTCCA TGCCAATAAA GCGTGTTCTT ATGATCAAGC CAGAGAAATT GAAGAAAGGA AATCTGTGGT CTAGAGATTG TGTTCCCTCG CCTGATTCTT GGTTGCCTCA GGAAGACGCT ATATTGTGTG CCATGGTTCA TGAATATGGG CCTAATTGGA ATTTGGTTAG CGGAACTCTT TATGGAATGA CAGCTGGTGG GGCTTACAGA GGACGGTATC GACATCCTGC ATATTGTTGT GAGAGATATA GAGAGCTTAT CCAACGACAT ATTTTGTCTG CTTCCGACAG TGCAGTGAAC GAGAAGAACG TCAACACAGG TTCTGGGAAG GCTCTCCTTA AAGTCACTGA GGAAAATATT CGGACACTCC TAAATGTTGC AGCTGAGCAG CCAGATACGG AGATGCTCCT ACAAAAACAT TTTTCTTGCT TGCTGTCATC AATTTGGAGG ACGTCGACCC GAACTGGGAA TGATCAAATG CTCTCCTTAA ACAGTCCTAT TTTCAACAGA CAGTTTATGG GTTCCGTGAA TCGCACCCAA GATTTAGCTA GAAAGCCTTG GCAGGGGATG AAGGTCACCA GCTTAAGTAG AAAGTTGTTA GAATCTGCTC TCCAGGATTC CGGCACGAGT CAACCAGACG ATACTGTTTC CCGTTCTAGG TTGCAGGAGA ATCAACCTAT CAATAAAGTG GGATTAGACT TAACCTTGGA ATTCCCACGC GGCAAAGATG ATTCCCTGAC ACAGTTTCCA CCCATGATAA ATCTGTCCAT TGATGAGTCA GATTCATTAA ATTATGTGAA TGAGCCCCCA GGGGAAGATG TTCTAAAAGG TTCTAGGGTT GCTGCAGAGA ACCGTTACAG GAATGCTGCA AATGCTTGTA TTGAAGATTC ATTTGGATGG GCTTCAAACA CGTTCCCAGC CAATGATCTG AAGTCAAAAA CAGGCACGAA AACACAGTCC CTGGGGAAAC ACAAGCTATC CGGCTCAGAC TCAGCCAAGT CTACAAAAAG CAAACACCGC AAACTCTTAG CAGAGCAATT GGAAGTGGCA TGGGTTAGGC CAAATGACCC GAATCTCAAG TTTGATTTCA CACCTGCTGA TAGGGAGGAC GAGGAGCAGG AGGTGGAGGA GAAAGCGGTT TCAGAAGAGA TAGAGATGAT AAGTTGTTCA CAATGGTATG ATCCATTCTT TACCTCAGGC CTTGATGATT GCTCATTAGC TTCGGATATC TCAGAAATAG AGTAGTAAAA GCCTTTTTGT AAAAGTAAAA ACCTGCTTGC AGAAGAAAAT GCTGATTATT ATGGATGACC ATTTTCTTAA C |
| Length | 6691 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 4837150.. 4846042 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G12810.1 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein |
| TAIR curator summary | Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). |
| Alias | [chr13][PIE1][SRCAP][PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg938459 | mitogen-activated protein kinase phosphatase 1 |
| 4.58258 |
Ahg478927 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 5.65685 |
Ahg477786 | ARM repeat superfamily protein |
| 6.08276 |
Ahg892895 | Splicing factor, CC1-like |
| 6.32456 |
Ahg481753 | AAA-type ATPase family protein |
| 9.48683 |
Ahg314636 | |
| 10.4881 |
Ahg490965 | U2 snRNP auxilliary factor, large subunit, splicing factor |
| 11.225 |
Ahg490579 | SEC7-like guanine nucleotide exchange family protein |
| 14.0712 |
Ahg928634 | RAB geranylgeranyl transferase alpha subunit 2 |
| 14.4222 |
Ahg472338 | squamosa promoter binding protein-like 14 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|