| Annotation |
|---|
| Description | jgi|Araly1|480677|fgenesh2_kg.3__3378__AT2G17790.1 |
| Sequence |
GAGAAACCCA GAGATCGAGA TTGAGATTTA GAGAAGAAGA AGATGATCGC AGACGGATCA GAAGATGAAG AGAAATGGCT CGCCGCCGGT GCTGCTGCGT TCAAGCAAAA CGCATTCTAC ATGCAACGCG CTATTGACTC GAATAATCTG AAAGACGCTC TCAAGTATTC GGCTCAGATG CTTAGCGAGT TACGGACTTC GAAGCTATCA CCTCACAAGT ACTATGATCT CTATATGCGA GCTTTTGATG AATTGAGGAA ACTTGAGATT TTCTTTATGG AAGAAACTCG GCGTGGCTGC TCGGTCATTG AACTCTATGA GCTGGTTCAG CATGCTGGTA ACATATTACC ACGTTTGTAT CTCCTATGTA CAGCAGGATC CGTTTATATC AAAACCAAGG AAGCTCCTGC CAAGGAAATT CTTAAAGATC TTGTTGAGAT GTGTCGTGGG ATTCAGCATC CTCTACGTGG TCTCTTCTTG AGAAGTTACC TTGCGCAGAT TAGTCGAGAT AAATTACCTG ACATTGGTTC TGAGTATGAA GGAGATGCTG ATACAGTCAC AGATGCTGTG GAGTTTGTTC TACTGAACTT TACTGAGATG AATAAACTCT GGGTCAGAAT GCAACATCAG GGACCTGCTC GAGAAAAGGA GAGACGGGAG AAAGAGAGGG GCGAGCTTCG TGACCTTGTT GGAAAGAACC TTCACGTGCT GAGTCAGTTA GAAGGTGTGG ACCTTGATAT GTACAGAGAT ACAGTTCTTC CTAGAGTCTT AGAGCAGATA GTGAACTGCA GAGATGAGAT TGCCCAATAT TACCTAATAG ACTGTATCAT TCAAGTTTTT CCTGACGAGT ATCACTTGCA GACTCTAGAT GTACTTCTTG GGGCGTGTCC ACAACTTCAG CCATCAGTTG ACATCATGAC AGTGCTTTCC CGTTTAATGG AGAGGCTATC AAATTATGCT GCCTTAAATG CTGAAGTATT ACCTTACTTC CTGCAAGTGG AAGCTTTCTC AAAGTTGAAT AATGCAATTG GAAAGGTGAT AGAAGCACAA GAAGACATGC CTATTCTGAG TGCAGTAACC CTATATTCCT CCCTTCTCAA GTTTACTCTT CATGTTCACC CTGATCGGCT TGATTATGCG GACCAAGTGT TGGGATCATG TGTTAAGCAA CTGTCCGGAA AAGGAAAGAT TGATGACACT CGTGCAACAA AGGAGCTTGT CTCGCTTTTG AGTGCTCCCT TAGAGAAGTA TAATGATGTT GTCACCGCCC TTAAATTAAC TAACTATCCC CTTGTAGTGG AGTACCTTGA TACCGAAACA AAGAGAATAA TGGCTACTGT TATAATTCGA AGCATTATGA AAAACAATAC TCTTATTACT ACAGCGGAGA AGGTTGAAGC ATTGTTTGAA CTGATTAAAG GACTTATCAA CGATTTGGAT GAGCCGCAAG GTCTTGAGGT TGATGAAGAT GATTTTGAGG AGGAGCAGAA TTCTGTTGCG CGTCTCATTC ACATGTTATA TAATGATGAC CCAGAAGAGA TGTTTAAGAT AGTCAGTATC CTGAAGAAGC ATTTCCTGAC AGGAGGGCCA AAGCGCTTAA AGTTCACCAT TCCTCCCCTT GTTGTTTCTA CTCTAAAGCT AATCAGGCGA TTGCCAGTGG AAGGAGACAA TCCTTTTGGA AAAGAGGCTT CCGTTACTGC TACTAAAATA TTCCAATTTC TAAATCAGAT TATCGAAGCG CTACCTAATG TTCCATCACC TGACCTAGCA TTCCGGTTGT ACTTGCAATG TGCTGAGGCT GCGAATAAGT GTGATGAAGA ACCAATTGCA TACGAATTTT TCACCCAGGC ATACATCTTA TACGAAGAAG AAATTTCGGA CTCAAAGGCC CAAGTGACCG CGTTACAACT TATAATTGGA ACTCTGCAAA GGATGCACGT ATTTGGTGTT GAGAATAGAG ATACATTAAC GCACAAGGCT ACAGGGTATT CAGCGAAACT TCTAAAGAAA CCTGATCAAT GTCGAGCTGT CTATGCCTGT TCACATTTGT TCTGGCTGGA AGATCGTGAG ACCATACAAG ATGGAGAAAG GGTTCTACTA TCTCTGAAAC GAGCGCTTAA AATTGCAAAT TCGGCTCAAC AAATGGCCAA CAAAGCACGG GGTAGTACAG GATCTGTTAC CCTCTTCATC GAGATACTAA ACAAGTACCT TTATTTCTAT CAGAAAGGGG TTCCACAGAT AACAGTTGAA TCAGTGGGAA GCCTGATAAA ACTAATCAAG AACGAAGAAT CGATGCCATC TGATCCATCT GCTGAATCGT TCTTTGCAAG TACGCTTCAG TTCATGGAGT TCGAAAAGCA GAAAGAGGGT GCCATTGGTG AAAGATACCA GGAGATCAAA GTATAGAATC TCATGTTGGT CAAAAAAAAA AAAAAGAGCT TTGCTTTGAG TCAGTTTGAG AATCAGGAAG GGACTTGTGT TGATTGCTGC TGGAAATGTA AACCTGGTTT AGGTCTGGTT TTTATACCTC GGATATTCAA GGCGGTTCAT GGTTTGTATC TTGTGGAGTT TGCTATGTTT GTTTATATGA ATCTTTATTG CTGAGTTTAA CATTGGATAT TA |
| Length | 2622 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 21008128.. 21015029 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G17790.1 |
| Description | VPS35 homolog A |
| TAIR curator summary | Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant. |
| Alias | [VPS35A][ZIP3][VPS35 homolog A][ZIG suppressor 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg478006 | multifunctional protein 2 |
| 4.24264 |
Ahg474170 | Ergosterol biosynthesis ERG4/ERG24 family |
| 4.47214 |
Ahg491217 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative |
| 5.65685 |
Ahg487555 | Calcium-dependent phospholipid-binding Copine family protein |
| 7.2111 |
Ahg486213 | exostosin family protein |
| 9.38083 |
Ahg481429 | Protein kinase family protein |
| 13.4907 |
Ahg494356 | ornithine-delta-aminotransferase |
| 17.7482 |
Ahg939269 | Protein kinase superfamily protein |
| 20.9762 |
Ahg487868 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related |
| 21.0238 |
Ahg488471 | HEAT repeat-containing protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|