| Annotation |
|---|
| Description | jgi|Araly1|481876|fgenesh2_kg.4__936__AT2G29630.2 |
| Sequence |
ACTCACTGTG CGCGATTCAG TTCATTTCTC GACCAGATCA GATTCACAGC TTCCTCTTCC AGCTATGGCT GCTTCAGTAC ACAGTACCTT GATGTCCGTC GTATGCAACA ACAAATCTCA CTCTGCTTGG CCTAAACTTC CAAACTCGTC TTTGTTACCT GGATTCGATC TTGTTGTTCA AGCTGCTGCT GCTACTCGAT TCAAGAAGGA AACAACAACC ACACGAGCCA CTTTGACCTT TGATCCACCA ACCACTAATT CTGAGAGAGC TAAGCAGAGA AAACACACCA TTGATCCTTC TTCTCCTGAT TTTCAACCAA TCCCATCTTT TGAAGAATGT TTTCCTAAGA GCACTAAAGA ACACAAGGAA GTTGTTCATG AAGAATCTGG TCATGTTCTT AAAGTTCCTT TTCGCCGTGT TCATTTGTCT GGTGGTGAGC CAGCTTTTGA TAATTATGAC ACTAGTGGTC CTCAAAATGT TAATGCACAC ATTGGGCTTC CTAAGCTAAG GAAGGAGTGG ATTGATCGCC GAGAGAAGCT AGGAACACCG AGATACACTC AAATGTACTA CGCTAAGCAA GGGATCATAA CTGAGGAAAT GCTCTACTGT GCTACGAGAG AGAAACTCGA CCCTGAGTTT GTAAGATCAG AAGTTGCACG AGGGCGGGCG ATTATCCCTT CCAACAAGAA ACATTTGGAG CTGGAACCGA TGATTGTTGG TAGAAAGTTC TTGGTTAAGG TCAATGCGAA TATAGGAAAC TCTGCTGTTG CAAGTTCTAT TGAAGAGGAA GTCTACAAGG TTCAGTGGGC AACCATGTGG GGAGCTGATA CAATCATGGA TCTCTCAACT GGTCGTCATA TCCACGAGAC ACGCGAGTGG ATCCTAAGGA ATTCTGCTGT GCCTGTTGGT ACAGTGCCTA TTTATCAAGC ACTTGAGAAA GTGGATGGAA TTGCTGAGAA TCTTAGCTGG GAAGTCTTCA GGGAGACTCT GATTGAACAA GCTGAGCAAG GTGTAGACTA TTTCACAATC CATGCTGGAG TTTTGCTGCG TTACATTCCC TTAACAGCCA AGCGTATGAC CGGGATCGTT TCGCGTGGAG GATCCATTCA TGCTAAATGG TGCTTAGCTT ACCACAAGGA GAACTTTGCT TACGAGCACT GGGATGACAT TCTAGACATC TGTAACCAGT ATGATGTGGC TCTTTCCATT GGAGATGGTC TGAGACCTGG CTCGATTTAT GATGCTAATG ACACTGCTCA GTTTGCGGAG CTCCTTACTC AAGGTGAACT AACTCGCCGA GCATGGGAGA AAGATGTGCA GGTGATGAAT GAAGGGCCAG GACATGTCCC AATGCACAAG ATTCCAGAGA ATATGCAGAA GCAGTTGGAA TGGTGTAACG AGGCACCATT CTACACTCTT GGGCCTTTGA CTACTGATAT TGCCCCTGGA TATGATCACA TTACCTCTGC CATTGGAGCT GCCAATATTG GAGCTTTAGG CACAGCTCTT CTTTGCTATG TAACACCGAA AGAACACCTC GGGCTACCAA ACAGGGACGA TGTGAAGGCT GGGGTTATAG CATACAAGAT CGCCGCTCAT GCAGCTGATC TAGCCAAACA GCATCCACAT GCCCAGGCAT GGGATGATGC GCTTAGCAAA GCGCGATTTG AGTTTAGATG GATGGACCAG TTTGCTCTGT CTTTGGACCC CATGACTGCT ATGTCTTTCC ATGATGAAAC TCTTCCAGCT GATGGAGCCA AGGTTGCACA CTTTTGCTCC ATGTGTGGAC CAAAATTCTG CTCTATGAAG ATAACAGAAG ACATCCGAAA GTATGCAGAG GAGAATGGTT ATGGCAGTGC TGAAGAAGCC ATCAGACAAG GAATGGATGC TATGAGTGAA GAGTTCAACA TTGCCAAGAA AACCATTAGC GGAGAACAGC ACGGTGAAGT AGGCGGAGAA ATCTATTTGC CAGAGAGCTA TGTCAAGGCT GCTCAGAAAT AAAAGGCAAA GGGTTTAAAC AAGATCTCGC TTACCCAAGT CTTGGTGCCT GTTGGACTAT ACCTCGATAA AGGCACAAAC TGTCGGGGTG CTTGAACCAG GCTAGCCCGC TAAAAGGCGG GTTATCCGGG ACCAGGCTGA GAAAGTCCCT TTGAACCTGA ACAGGGTAAT GCCTGCGCAG GGAGTGTGCA GTTTTTTTTT TCCTGTTCTG TAGCTTTCTA AAGGAGAAGA AGCTACGGTT GCCG |
| Length | 2244 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 12987171.. 12990242 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G29630.2 |
| Description | thiaminC |
| TAIR curator summary | Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3' UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the formation of transcripts with alternative 3' UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine. |
| Alias | [PY][THIC][PYRIMIDINE REQUIRING][thiaminC] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg946523 | chloroplast beta-amylase |
| 3.4641 |
Ahg475979 | Major facilitator superfamily protein |
| 4.12311 |
Ahg489476 | catalytics;carbohydrate kinases;phosphoglucan, water dikinases |
| 4.79583 |
Ahg482714 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 5.65685 |
Ahg491493 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 5.91608 |
Ahg930731 | |
| 8 |
Ahg950127 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) |
| 8.3666 |
Ahg485074 | alpha-glucan phosphorylase 2 |
| 9.16515 |
Ahg928005 | |
| 9.43398 |
Ahg930788 | ferredoxin thioredoxin reductase catalytic beta chain family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|