| Annotation |
|---|
| Description | jgi|Araly1|483042|fgenesh2_kg.4__2102__AT2G40030.1 |
| Sequence |
GAAGAACAAA AGATTTTTGT GAGAGAGAAA AAAAAGAGTC ACTCCAAAAT TGTTCTCTGG CAATCTTCTT TCTGGGGTTT TTCTCTTTAA AGAAAAAGTC CGCCATTTTC ACTCTCACTC AGATTTCTCC CTCTTTTCAC CTGCAAAAAC CCTTGTTTCC CGTTGTTTCG TTTCTTCTCT GGTTCAGGAG CCAAAACGGG TCAAATACGC TGCTGAATCG TCGATTCTTA GGTATTTTGT CATGGAGGAA GAATCTTCAT CAGAGATTCT TGAAGGAGAG ATTGTTGGAA TCACATTTGC TCTTGCAACT CACCATGAAA TTTGTATAGC ATCAATTAGT GGATCCGCAA TCAATCATCC CAGTCAACTC ACTAACTCAT TCTTGGGGTT ACCTCTTGAA TTTGGTAAAT GTGAATCTTG CGGTGCGACA GAACCAGATA AATGTGAAGG TCATTTTGGT TATATTCAGC TTCCAGTGCC AATATACCAT CCTGCTCATG TTAATGAGTT GAAACAAATG CTGAGCCTTC TGTGCTTGAA ATGTCTGAAG ATAAAGAAGG CAAAGAGCAC AAGTGGTGGT CTGGCGGATC GCTTATTGGG TGTCTGTTGT GAGGAAGCTT CGCAAATCTC AATCAGAGAT AGAGCATCAG ATGGTGCCTC ATATCTAGAA CTGAAGCTCC CATCTAGGTC AAGACTGCAG GCGGGTTGCT GGAATTTCCT GGAAAGATAT GGTTATCGCT ATGGAAGCGA TTATACGCGA CCCCTGCTGG CAAGAGAGGT AAAGGAAATT TTAAGACGGA TCCCCGAAGA AACAAGAAAG AAACTCACAG CAAAGGGACA TATTCCTCAA GAAGGATACA TATTAGAATA TCTTCCTGTC CCGCCTAACT GCTTGTCAGT GCCAGATGTT TCTGATGGTT ACAGCTCCAT GTCAGTGGAT CCTTCCAGAA TTGAGCTAAA AGACGTCCTT AAGAAAGTGA TAGCCATAAA AAGCTCTAGG TCTGGCGAGA CAAACTTTGA GTCGCATAAG GCTGAAGCCA ATGACATGTT TAGAGTGGTG GATACCTATC TGCAGGTGAG GGGTACTGCA AAAGCTGCAA GAAACATTGA TATGAGATAC GGGGTGTCTA AGATCTCGGA TAGTTCATCT TCAAAAGCTT GGACACAAAA AATGAGGACA CTTTTCATCC GAAAGGGTTC AGGTTTCTCT TCCCGTAGCG TCATCACTGG AGATGCTTAC AGACACGTGA ATGAGGTAGG GATCCCAATA GAAATTGCGC AGAGAATCAC ATTTGAGGAA AGGGTTAGTG TCCACAACAT AGGTTATCTA CAAAAGTTGG TAGACGACAA GTTGTGTTTG AGTTATACTC AAGGTTCCAC GACCTATTCT TTAAGGGATG GATCCAAGGG GCACACTGTG CTTAAACCCG GGCAGGTTGT TCATCGCAGG GTCATGGATG GGGATGTTGT GTTCATCAAC CGACCCCCGA CAACCCATAA ACATTCTCTT CAAGCGCTTC GGGTGTATGT TCATGAAGAC AACACCGTGA AGATTAACCC TCTGATGTGT AGCCCCCTCA GTGCTGATTT TGATGGTGAT TGTGTCCATC TCTTCTACCC TCAGTCACTT AGTGCTAAGG CAGAGGTTAT GGAGCTTTTC TCTGTGGAGA AGCAACTGCT TAGCTCGCAT ACTGGACAGC TGATTCTGCA GATGGGTTGT GATTCTTTAC TATCTTTGAG GGTAATGCTG GAGGGGGTGT TTCTGGACAA GGCAACTGCT CAACAGTTAG CTATGTATGG CTCTCTGTCT CTGCCACCAC CAGCACTAAG GAAGTCCAGT AAATCTGGCC CAGCTTGGAC AGTTTTTCAG ATTTTACAGC TTGCCTTTCC AGAGCGTCTG AGCTGCAAAG GAGATAGATT CATGGTTGAT GGAAGTGATT TGCTGAAGTT TGATTTCGGG GTTGACGCGA TGGCATCCAT CATCAATGAA ATTGTAACTT CAATCTTCCT GGAGAAGGGT CCAAAGGAGA CACTTGGATT CTTTGATTCA CTGCAGCCTC TATTGATGGA AAGTCTGTTT GCTGAGGGCT TTAGTGTAAG TTTGGAAGAC TTATCCATGT CCAGGGCAGA CATGGATGTA ATTCACAACC TAATAATCCG AGAGATTTCA CCTATGGTGT CTCGCTTGAG ATTATCATAT AGAGATGAAC TGCAACTAGA GAACAGCCTC CACAAAGTGA AGGAAGTGGC TGCTAACTTT ATGCTGAAGT CATATTCCAT GCGGAACTTG ATTGACATCA AGAGTAACTC AGCAATCACC AAGCTGGTGC AGCAAACAGG CTTCTTGGGT CTTCAGCTTT CTGACAAGAA GAAGTTCTAT ACGAAGACTC TGGTAGAGGA CATGGCCCTC TTTTGTAAGA GAAAGTATGG CAGGATTTCT TCATCTGGTG ATTTTGGAAT AGTGAAGGGC TGCTTCTTTC ATGGGCTGGA TCCGTATGAA GAGATGGCTC ATTCAATTGC AGCTAGGGAG GTAATTGTTC GCTCTTCAAG GGGGTTAGCT GAGCCTGGAA CCCTCTTTAA GAACCTGATG GCTGTTCTTC GGGATATCGT GATTACAAAC GATGGAACTG TACGAAACAC CTGTAGTAAC TCAGTCGTCC AGTTCACATA TGGAGTTGAT TCTGAACTTG GACATCAAGG TCTGTTTGAA GCGGGAGAAC CTGTTGGAGT ATTGGCAGCT ACTGCCATGT CAAATCCTGC GTATAAGGCA GTGCTTGATT CTACTGCTAA TAGTAATTCA TCGTGGGAGC AAATGAAGGA AGTTCTGCTC TGCAAAGTCA ATTTCCAAAA CACTACTAAT GATCGGCGCG TAATTCTTTA TCTAAATGAA TGCCATTGTG GAAAAAGGTT TTGCCAGGAA AATGCTGCTT ACACAGTCAG GAACAAGCTG AAGAAAGTTA GTCTTAAAGA TACTGCAGTG GAATTCCTAG TCGAATACAG AAAGCAACAA ACTATATCAG AAATATTTGG AATCGATTCA TGCCTACATG GCCATATTCA TCTTGATAAG ACATTGTTGC AAGATTGGAA CATCAGTATG CAGGATATAC TTCAAAAGTG TGAGGATGTA ATTAATTCAC TAGGACAAAA GAAAAAGAAG AAAGCTACTG ATGACTTCAG GAGAACAAGT TTGTCTGTCA GTGAGTGCTG CTCTTTCCAA GATCCTTGTG GGAGAAAAGA TTCGGATATG CCTTGTTTGA TGTTCTCCTA CAGTGCCACC GATCCTGATC TAGAAAGAAC TCTTGATGTT CTTTGCAATA CAATTTACCC GGTTCTGCTG GAAACAGTGA TCAAAGGTGA TCCACGGATT TGCTCAGCAA ATATAATCTG GAATAGTTCA GACATGACAA CATGGATCCG GAATTGTCAT GCATCCCGCC GAGGGGAATG GGTTTTGGAT GTCACTGTTG AAAAATCTGC TGTCAAGCAA AGTGGTGATG CATGGAGGGT TGTGATAGAC GCATGTCTTT CAGTGCTTCA TCTAATAGAC ACAAAACGGT CAATCCCTTA TTCTATAAAA CAAGTGCAAG AATTGCTTGG GTTATCCTGT GCTTTTGAGC AAGCAGTACA GCGTCTATCA GCTTCAGTGA GAATGGTCTC CAAAGGAGTT TTGAAAGAAC ACATCATTCT CCTAGCAAAC AACATGACTT GTTCAGGGAA TATGTTGGGT TTCAATTCTG GAGGTTACAA AGCTTTGACC CGATCCTTAA ACATCAAGGC TCCATTCACA GAAGCAACTC TGATTACACC AAGAAGATGT TTTGAGAAAG CGGCTGAGAA ATGTCATACA GATTCTCTGT CAACAGTCGT TGGGTCTTGT TCTTGGGGAA AACGCGTGGA TGTTGGTACA GGTTCACAGT TTGAGCTCCT ATGGAACCAA AAAGAGACTG GTCTAGATGA TAAAGAAGAA ACAGATGTGT ACAGCTTTCT CCAAATGGTC AGATCCACGA CAAATGCAGA TGCATATGTT TCTTCCCCTG GTTTTGATGT TACAGAGGAA GAAATGGCTG AATGGGCTGA ATCGCCCGAG CGAGACTCTG CTCTTGGAGA GCCCAAGTTT GAGGACAGTG CCGAGTTCCA AAATTTACAT GACGAAGGCA AGCCATCAGA ATCCAACTGG GAGAAAAGCT CTTCATGGGA CAATGGTTGC AGTGGTGGTT CAGAGTGGGG AGTCTCAAAA AATACAGGTG GTGAGGCAAA CCCGGAGTCT AATTGGGAAA AGACTACAAA TGTTGAGAAG GAAGATGCTT GGTCTAGTTG GAACACTAAA AAAGATGCTC AAGAATCTTC CAAGTCAGAT TCAGGGGTTG CTTGGGGCTT AAAGACAAAG GATGATGATG CAGATACAAC ACCAAACTGG GAAACAAGAC CAGCTCAGAC GGATTCTATT GTCCCAGAAA ATAATGAGCC AACTTCTGAC GTTTGGGGAC ACAAATCTGG TTCAGACAAA TCTTGGGACA AAAAGAACGG GGGAACTGAA TCAGCTCCTG CTGCATGGGG TTCTACAGAT GCTGCTGTTT GGGGTTCTAG TGATAAAAAG AACTCGGAAA CGGAATCAGA TGCTGCTGCT TGGGGTTCTA GGGACAAAAA GAATTCTGAA GTTGGATCAG GTGCTGGTGT TTTGGGTCCC TGGAACAAGA AGAGCTCGAA AACTGAGTCA GATGGTGCTA CTTGGGGTTC TAGTGACAAA ACTAAATCAG GTGCTGCTGC ATGGAGTTCT TGGGACAAAA AGAACATGGA AACTGACTCG GAACCTGCTG CTTGGGGTTC TCAGAGCAAA AATAAACCTG AAACTGAGTC AGGTCCTTCT ACTTGGGGTG CTTGGGATAC AAAGAAATCG GAAACTGAAT CAGGTCCTGC TGGTTGGGGT ATCGTGGACA AAAAGAATTC TGAAACTGAA TCAGGTCCTG CTGCTATGGG TAATTGGGAC AAAAAGAAAT CGGATACTGA ATCAGGTCCA GCTGCTTGGG GATCTACAGA TGCTGCTGTT TGGGGTTTTA GTGACAAAAA CAATTCGGAA ACTGAATCAG ATGCTGCTGC TTGGGGTTCT AGGGACAAAA AGACTTCTGA AACTGAATCA GGTGCTGCTG CTTGGGGTTC TTGGGGACAG CCAACTCCCA CTGCAGCAAA CGAGGATGCC AATGAAGATG ATGAAAACCC GTGGGTTTCC TTGAAGGAGA CCAAAAGTAG AGATAAGGAT GATAAAGAGA GAATCCAGTG GGGAAATCCA GCCAAGAAAT TTCCATCTAG TGGTGGCTGG TCCAATGGTG GTGGTGCAGA CTGGAAAGGA AAGAGGAACC ATACTCCTAG GCCACCTAGA TCTGAGGATA ATTTGGCTCC CATGTTTACA GCAACGAGAC AGCGCTTGGA CTCATTCACC TCTGAGGAGC AAGAGCTGCT CTCAGATGTT GAGCCAGTCA TGAGGACTCT CAGGAAAATA ATGCATCCGT CTGCGTACCC TGATGGAGAC CCAATTTCTG ATGATGACAA GACGTTTGTC CTGGAGAAGA TTTTGAACTT CCATCCCCAA AAAGAGACAA AGCTCGGTTC TGGTGTTGAT TTCATCACGG TTGATAAGCA CACCATCTTC TCAGACAGCA GGTGCTTCTT TGTTGTCTCA ACTGATGGGG CCAAACAGGA CTTTTCATAC CGAAAATCCC TCAACAACTA TTTGATGATG AAATACCCTG ACCGCGCTGA AGAATTCATT GACAAGTACT TTACGAAACC TCGGCCTAGC GGAAACAGAG ACAGGAACAA CCAAGATGCC ACACCACCTG GGGAAGAACA GTCTCAGCCT CCGACTCAGT CTATAGATAA TGGTGGTGAC GACTTTAAGA CTCAGACTCA GTCTCCATCT CAGACTCAGG CTCAGGCTCA GGCTCAGGCT CAGGCTCAGT CTCCATCTCA GACTCAGACT CAGTCTCCGT CTCCGTCTCA GACTCAGACT CAGTCTCAGT CTCAGACTCA GGCTCAGACT CAGACTCCAT CTCAGTCTCC GTCCCAGACG CAGACATACT CTTGAGAACC AAAGAAGATT TGGTTGGTTT AGGTAAACCA TTGAGTCTCC ACTGTTTTGT TTTGAGATGT ACATAAAGAG TGGAGAGAAT GGCGGGTTTT ATTTATCATT AAAAGGCTCT GATGTGAAGT GCAAAACAAT GTGTAAATGC AGTTCTCTAG TTTCAGATCG TTTGTCCT |
| Length | 6258 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 18485299.. 18494316 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G40030.1 |
| Description | nuclear RNA polymerase D1B |
| TAIR curator summary | Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. |
| Alias | [ATNRPD1B][DMS5][DRD3][NRPD1B][NRPE1][DEFECTIVE IN MERISTEM SILENCING 5][nuclear RNA polymerase D1B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg329795 | G2484-1 protein |
| 3 |
Ahg932069 | Coatomer, alpha subunit |
| 3.87298 |
Ahg488483 | Vps51/Vps67 family (components of vesicular transport) protein |
| 5.91608 |
Ahg472400 | Calcium-binding EF hand family protein |
| 8.3666 |
Ahg322858 | hydrolases, acting on ester bonds |
| 10.7703 |
Ahg470642 | Ribosomal protein S5/Elongation factor G/III/V family protein |
| 12.49 |
Ahg483660 | Plant protein of unknown function (DUF641) |
| 12.6491 |
Ahg473200 | carbamoyl phosphate synthetase B |
| 12.6491 |
Ahg489225 | phosphate deficiency response 2 |
| 12.7279 |
Ahg491060 | RNA polymerase II large subunit |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|