| Annotation |
|---|
| Description | jgi|Araly1|470642|fgenesh2_kg.1__596__AT5G25230.1 |
| Sequence |
ATGGAGGAAA GCTTATATGA TGAGTTTGGT AACTATATTG GACCTGAGAT TGAGTCTGAC AGAGACAGTG ATGATGAAAT AGAAGATGAA GATCTCCAAG ATAAGCAACT TGAAGAAAAT GGATCGGATG GCGAACATGG TCCTGGGGGT TCCAATGGCT GGATTACCAC TATCAATGAT GTTGAGATGG AGAACCAAAT TGTTCTTCCT GAGGATAAGA AGTACTACCC TACTGCTGAG GAGGTTTATG GTGAGGGTGT TGAGACCTTG GTTATGGATG AAGATGAGCA GCCTCTTGAG CAACCCATTA TCAAACCTGT TAGAGATATT AGATTTGAGG TGGGGGTCAA GGATCAATCA ACCTATGTGT CTACACAGTT TCTTATCGGC CTCATGTCTA ATCCCGCGCT TGTGAGGAAT GTTGCTCTCG TGGGGCATCT ACAGCACGGC AAAACTGTCT TCATGGATAT GTTGGTAGAG CAGACGCATC ATATGTCTAC TTTTAATACT AAAAACGAGA AGCATATGAA ATATACAGAC ACAAGAGTCG ATGAGCAGGA GAGAAATATA TCAATCAAGG CGGTTCCAAT GTCTCTTGTC CTTGAGGACA GTAGATCCAA ATCATACCTG TGCAATATCA TGGATACCCC TGGACACGTC AATTTCTCTG ACGAAATGAC TGCTTCTTTA AGACTTGCTG ATGGTGCTGT TCTGATTGTT GATGCTGCTG AAGGAGTGAT GGTAAACACA GAGAGAGCTA TACGGCATGC AATCCAGGAC CGTCTCCCTA TTGTTGTTGT CATCAATAAG GTTGACAGGC TCATAACTGA GCTCAAACTA CCTCCAAGGG ATGCTTACTA CAAGCTGAGG CATACAATTG AAGTCATTAA CAACCACATA TCTGCTGCTT CAACAACTGC TGGAAACTTA CCTCTTATAG ACCCTGCAGC TGGAAATGTA TGTTTTGCCA GTGGCACAGC CGGATGGTCG TTCACATTGC AATCTTTTTC TAAAATGTAT GCCAAGCTTC ATGGGGTGGC CATGGACGTG GATAAGTTTG CATCTCGACT TTGGGGAGAT GTTTATTATC ACCCTGATAC TAGGGTATTC AAGAGAAGTC CTCCTGTAGG TGGTGGAGAA AGAGCATTTG TTCAGTTTAT TCTGGAGCCT CTGTACAAAA TATACAGCCA AGTGATAGGT GAACATAAGA AGAGTGTAGA GACAACCCTT GCAGAATTAG GAGTGACTCT GAGTAATAGT GCATATAAGC TGAACGTCAG ACCTTTACTT AGGTTAGCCT GTAGTTCAGT TTTTGGTTCG GCATCAGGGT TCACTGATAT GTTGGTAAAG CACATTCCTT CCCCCCGAGA GGCCGCAGCT AGGAAAGTCG ACCATTCATA CACTGGAACC AAAGATTCCC CCATTTATGA ATCAATGGTA GAATGTGATC CATCTGGACC TCTCATGGTT AATGTGACAA AGTTGTACCC CAAATCAGAT ACTAGTGTTT TTGATGTGTT TGGAAGAGTT TATAGCGGTA GGCTTCAAAC AGGGCAAAGC GTACGTGTAC TAGGAGAAGG GTATTTACCT GAGGATGAGG AGGACATGAC TATAAAAGAA GTGACGAAGC TATGGATATA TCAAGCTAGG TATAGAATAC CAGTAAGCAG TGCCCCTCCT GGTTCCTGGG TTTTAATTGA AGGTGTCGAT GCATCCATCA TGAAAACTGC GACTCTGTGT AATGCAAGCT ACGATGAAGA TGTTTACATA TTCCGGGCTC TCCAATTTAA TACCCTCCCA GTAGTCAAGA CTGCAACTGA GCCTTTGAAT CCTAGTGAGC TGCCTAAAAT GGTGGAAGGG CTTAGGAAAA TTAGCAAAAG CTATCCCCTT GCGATTACCA AAGTCGAGGA GTCTGGGGAA CATACTATTC TAGGCACTGG TGAGTTGTAC TTGGATTCCA TCATGAAGGA CCTCAGGGAA CTCTATTCAG AGGTCGAAGT AAAGGTAGCA GATCCGGTGG TCTCCTTCTG TGAGACAGTA GTTGAATCTT CGTCGATGAA GTGTTTTGCT GAGACACCAA ACAAAAAGAA CAAAATAACT ATGATTGCAG AGCCATTGGA TAGAGGACTT GCAGAGGACA TTGAGAATGG CGTTGTAAGC ATTGACTGGA ACAGAAAACA ACTTGGTGAC TTCTTCAGGA CGAAATATGA CTGGGATTTA CTTGCTGCAC GTTCCATCTG GGCTTTTGGC CCTGACAAAC AGGGGCCAAA TATATTATTG GATGACACGC TTCCAACTGA GGTGGACAGG AACTTGATGA TGGCAGTGAA AGACTCCATT GTTCAAGGGT TCCAGTGGGG TGCTCGTGAA GGTCCCCTCT GTGATGAGCC CATCAGAAAT GTAAAGTTCA AGATTGTTGA TGCAAGGATA GCACCAGAGC CGTTGCATAG AGGATCTGGT CAGATGATTC CAACAGCAAG ACGTGTTGCA TATTCAGCCT TTCTTATGGC AACTCCAAGG CTAATGGAAC CTGTCTACTA TGTGGAGATA CAAACGCCAA TCGACTGTGT AACTGCAATC TACACAGTTT TGTCACGTAG ACGTGGGCAT GTCACATCTG ATGTTCCTCA ACCCGGTACT CCGGCTTATA TTGTGAAGGC TTTTCTGCCT GTGATAGAGT CATTTGGGTT TGAGACAGAT CTGAGGTACC ACACTCAGGG ACAAGCCTTT TGCCTATCTG TGTTTGATCA CTGGGCCATA GTGCCAGGAG ACCCTCTAGA CAAAGCCATA CAATTGCGCC CACTTGAGCC CGCCCCTATT CAGCATCTAG CTCGTGAATT CATGGTCAAG ACCCGCCGTA GAAAGGGAAT GAGCGAAGAC GTCAGCGGGA ATAAATTCTT TGATGAAGCG ATGATGGTAG AGCTTGCCCA GCAAACAGGC GATCTCCATC TGCAGATGAT TTGA |
| Length | 2964 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2122046.. 2126112 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G06220.2 |
| Description | Ribosomal protein S5/Elongation factor G/III/V family protein |
| TAIR curator summary | Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. |
| Alias | [CLO][GFA1][MEE5][CLOTHO][GAMETOPHYTE FACTOR 1][MATERNAL EFFECT EMBRYO ARREST 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg477251 | Pre-mRNA-processing-splicing factor |
| 2.23607 |
Ahg483494 | Transducin/WD40 repeat-like superfamily protein |
| 2.44949 |
Ahg491464 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain |
| 3 |
Ahg336019 | non-ATPase subunit 9 |
| 4.12311 |
Ahg932069 | Coatomer, alpha subunit |
| 4.69042 |
Ahg476796 | Ribophorin I |
| 5.19615 |
Ahg492815 | small nuclear ribonucleoprotein associated protein B |
| 5.2915 |
Ahg495202 | splicing factor-related |
| 5.47723 |
Ahg935928 | Endomembrane protein 70 protein family |
| 6.9282 |
Ahg472806 | decapping 5 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|