| Annotation |
|---|
| Description | jgi|Araly1|487601|fgenesh2_kg.6__735__AT5G07660.1 |
| Sequence |
ATGGATGAAC ATGGCAATCA ACAGAGTAAT CCCTTCAACG ATCAACGACC TAGCTCCGGT ACGATCGTTA GGATTCGCCT TGAGAATTTC ATGTGCCACA GTAATCTCGA GATTGAGTTT GGCGATTGGG TCAATTTCAT CACTGGCCAA AACGGAAGTG GTAAGAGTGC GATTTTGACT GCTCTATGTG TTGCCTTTGG ATGTCGAGCC AGGGGAACTC AGCGCGCCGC TACGCTAAAA GATTTCATTA AAAATGGATG CAGTTATGCC CTTGTTCATG TCGAACTGAA AAACCAAGGA GAGGATGCTT TTAAGCCTGA AATATATGGT GATACTCTGA TTATTGAACG CAGGATATCT GATTCTACTA GTTTAACGGT TCTCAAGGAT CATCAAGGAA GAAAAATATC TAGCCGAAGA GAGGAGCTAC GGCAACTTGT TGAACATTAT AATATTGATG TTGAGAATCC CTGTGTGATA ATGAGTCAAG ACAAGAGCAG GGAGTTCTTA CATTCTGGAA ACGACAAAGA CAAATTCAAG TTCTTTTATA AAGCAACCCT TCTCCAGCAA GTCGATGATC TTCTTCAAAG TATTGGCACT AAGTTGAAAT CTGCAAATGC TCTTATGGAT GAGATGGAGA AGACCATAAA ACCAATACAA AAGGAGATCA GTGAATTGCT TGAAAAGATA AAGAATATGG AACATGTTGA AGAAATAACT CAACAGGTTC TGCATTTGAA AAATAAACTA GCTTGGTCAT GGGTATATGA TGTGAATAGG CAGCTCATGG AGCAGAATGA GAAGATCGTG AAACTCAGAG AACGAGTGCC TACTTGTCAA AATAAAATTG ATCGGAAACT GGGTGAGGTG GAGTCTTTAA GGGTAAGCTT GACCGAGAAG AAAGCTCAAG TTGCCTGCCT GATAGATGAA TCAACTGCGA TGAAGAGAGA GCTAGAGTGT TTGCGGCAAT CAATGAAGAA GGCTGCTAGA GAGAAGATTG CTTTAGAAGA AGAATACCAT CATAAGTGCA ATAACATTCA GAAGATTAAG GATCGTGTTA GGAGGCTTGA ACGACAGATT GGAGATATTA ATGAAATGAC TATAAGAAGC ACACAGGTTG AACAATCTGA AATCGAAGAA AAACTGAAGC AATTGATGCT AGAGGTTGAG AAGGCTGAAT CATTGCTTTC TAGTTTGAAA GAGGAGGAGA ACATGATAAT AGAAAAAGCA TCAGCCGGAG GGAAGGAGAA GGAACACATA GAGCATATGA TTAGAGACCA TGAAAAGAAG CAAAGAAACA TAAACGCGCA CATCAATGAT CTGAAGAAAC ATCAAACAAA TAAGGTTACC GCATTTGGAG GGGACAGAGT CATTAATCTT TTGCGAGCGA TTGAGAGACA TCACCGCAGA TTTAAAATGC CACCGATTGG TCCGATTGGT CCGATTGGTG CTCATGTGAC ATTGGTCAAT GGTAATAGAT GGGCTTCTGC AGTTGAACAA GCTCTTGGCA ACCTCCTGAA TGCCTTTATT GTGAACGATC ACAAAGATTT AGTTACTTTG CGAGACTGTG GAAAGGAAGC AAATTATAAC AATCTAAAGA TTATCATCTA TGACTTTTCA AGACCAAGGT TAACTATACC AAGGCACATG ATTCCTCAAA CAGAACACCC AACTATTCTC TCTGTCTTGC ACTCAGAGAA TACTACTGTT CTTAACGTCT TGGTGGATGT GAGTGGTGTA GAGCGGCGAG TGCTTGCAGA GAATTATGAA GTTGGCAAGA CCATTGCCTT TGAGAGAAGG CTTTCGCATC TGAATGATGT TTTCACTATA GATGGATACC GAATGTTTTC CCGTGGGCCT GTTCAGACAA CCCTTCCTCC CCGTTCCCGG AGACCTACTC GATTGTGTGC TTCTTTTGAT GACCAAATCA AGGATCTTGA AATAGAGGCC TCAAAAGAAC AAAGTGAGAT ACAGGAATGC AGGGGACAAA AGAGGGAGGC AGAAATGAAT CTCGAGGGTC TTGAATCAAC AATGCGTAGA CTGAAGAAGC AACACACCCA ACTAGAGAAA GATTTGACAA GGAAGGAAAT TGAAATGCAG GATCTGAAAA ATTCAGTCGC TTCTGAAACC AAAGTATCAC CTACTTCAAG TGTTAATGAG CTTCATCTAG ATATCATGAA ATTCCAAGAA GAGATAGAGG AGAAAGAATC CTTGCTAGAA AAACTTCAAG ACTCCTTGAA GGAAGCTGAA ATAAAGGCTA ATGAACTTAA AGCTTCATAT GAAAAATTAT ATGGGGAAAT TGAAGCCCTT GAGAAAGCTG AGGATGAGCT AAAGGAGAAA GAAGAAGAAC TCCAATCCGC AGAAACGGAG AAGAACCATT ATGAGGATAT AATGAAGGAC AAGGTCTTAC CCGAGATTAA ACAGGCTGAG GCTAAATATG AGGAACTTAA AACGAAGCGG CAGGAAAGTA ACGAGAAGGC CTCCATAATT TGTCCTGAGA GTACGATAAG AGCTTTGGGT CCTTGGGATG GGGCCACTCC TTTGCAGCTT AGTGCTCAGA TTAACAAAAT AAATCATAGA CTGAAGCGAG AGAATGAGAA GTGCTTAAGT TTCTGTGCCT TGTATTCTGA ATCAATCGAT GACCTCAGGA TTATGCACGA GGAAAAAGAA CAGAAGATTG GGAAGAAACG CAAAACTTAC AAAAGCTTTC GAGAAAAACT CAAGGTCTGC AAAGATGCAG TAGACTCACG GTGGAACAAG CTCCAAAGAA ATAAAGATCT TCTGAAGCCC CAATTAACTT GGCAATTTAA CTCTCATTTA GGAAAGAAAG GTATCAGTGG AAATATCAGA GTCTCTTATG AAGACAAAAC TTTGTCCATA GAGGTTAAGA TGCCTCAAGA TGCAACAAAC AGTGCTGTTC GAGATACTAG AGGGCTTTCA GGTGGGGAAC GATCTTTCTC GACTTTATGT TTCGCATTGG CTCTTCACAA TATGACTGAA GCCCCAATTC GAGCAATGGA CGAGTTTGAT GTGTTTATGG ACGCAGTTAG CAGGAAAATC AGCTTAGACA CATTGGTTGA TTTCGCATTG GAACAAGGTT CACAGTGGAT GTTCATCACT CCTCATGATA TAAGTATGGT AAAGTCACAC GAGAAGATAA AGAAGCAACA AATGGCTGCT CCTCGTTCTT GA |
| Length | 3192 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 2857944.. 2865163 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G07660.1 |
| Description | structural maintenance of chromosomes 6A |
| TAIR curator summary | Encodes SMC6A (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6A), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. |
| Alias | [SMC6A][structural maintenance of chromosomes 6A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.16515 |
Ahg479408 | RING/U-box superfamily protein |
| 30.545 |
Ahg480822 | heavy metal atpase 4 |
| 31.0805 |
Ahg313836 | HAC13 protein (HAC13) |
| 36.7423 |
Ahg936692 | AIG2-like (avirulence induced gene) family protein |
| 43.1741 |
Ahg920545 | cytochrome p450 79f1 |
| 51.4393 |
Ahg485366 | VIER F-box proteine 2 |
| 75.3591 |
Ahg897087 | HOPM interactor 7 |
| 78.5366 |
Ahg311407 | Beige/BEACH domain ;WD domain, G-beta repeat protein |
| 79.1454 |
Ahg888385 | Major facilitator superfamily protein |
| 79.7245 |
Ahg494868 | Protein of unknown function (DUF1423) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|