| Annotation |
|---|
| Description | jgi|Araly1|489162|fgenesh2_kg.6__2296__AT5G23080.1 |
| Sequence |
TCTCGGTGGT GAAGACAATG GGGTCAGACG AGGAAGATTT CGTGTTTCAT GGGACACCAA TAGAGCGCGA AGAAGAAATC GCGAGTCGGA AGAAGAAAGC AGTCGCTGGG GCTTCAGGCA ATCTTAGAAC TCTTCCTGCT TGGAAGCAAG AGGTGACTGA TGAAGAAGGC CGGAGAAGGT TCCATGGAGC ATTTACTGGT GGATATTCTG CTGGGTATTA CAATACAGTG GGATCAAAAG AGGGTTGGGC TCCACAGTCA TTTACATCTT CAAGGAAGAA CAGAGCTGGA GCGAGAAAGC AAAGTATTTC AGACTTTCTA GATGAAGATG AAAAGGCTGA TATGGAGGGC AAGTCACTTT CTGCGAGCTC ACAATTTGAT ACATTTGGGT TTACGGCAGC TGAACATTCC CGCAAGCAAG CTGAGAAAGA ACAGCATGAG AGGCCATCAG CCATTCCTGG CCCAGTTCCT GATGAACTTG TTGCTCCAGT TTCAGAGTCA ATTGGGGTCA AACTTTTGCT AAAGATGGGA TGGCGGCGTG GTCATTCAAT AAAGGATGTG CGTGCCAGTT CAGATGCTCG TAGAGAAGCT AGAAAAGCAT TCTTAGCCTT CTCTACTGAT GAGATTACAA AGGAAACGCC CGACTCACTG GTTTCGGAGA CTGACGCGGA AACTTCTCTG GGTCCACAGT TTAGTGAAGA TATTAAAATT TCTGAAAGCA CTCCTGTATA TGTTCTGAAT CCAAAGCAAG ATCTGCATGG ATTAGGATAT GATCCTTTTA AGCATGCTCC TGAATTTAGA GAAAAGAAAA GATCTCGCTT GTCTGCCAAT AAGGAGGTTG GCTTCAGAAA ACCTTTATCA ATGAAGGAAA GTCTTTTTGG ACCCAAATCA GGAAAGATTG CTCCGGGTTT TGGCATTGGA GCACTTGAGG AACTTGATGT TGAGGATGAA GATGTCTATG CTGGTTACGA TTTTGATCAG ACTTATGTCA TAGAAGACGA ACAGCCAGCA AGACCGAGCA ATGACAGTAG ACTGAGGTTA ACCTCAAAAG AGCATGACGT TCTGCCAGGT TTTGGAGCTG CTAAGAATTC TGACTACAGT ATGGAGAGAT TTAATCCTCC GAATATCCCC AAGGATTTTG TTGCCCGGCA TAAATTTTCT GGTCCTCTTG AGGCTGAAAC TAAGCCAACT GTTTCTGCTC CTCCAGAAGT TCCTCCCCCT GCAGATAATA ATCTGAAACT TCTGATCGAG GGGTTTGCAA CTTTTGTTTC CCGTTGCGGG AAACTATACG AGGATCTTTC TAGAGAGAAG AACCAATCAA ATCAGCTGTT TGATTTTCTT CGGGAAGGTA ACGGTCATGA CTACTACAGA AGAAGGCTGT GGGAGGAGCA GCAAAAGCGC AAAGATCAAA GTAAGCTGAC ATTAGATGTT AAGCTGTCTC CAACCGTTCA GAAAATGACT GCAGAAACCC GTGGCAGCTT ATTAGGGGAA AAGCCACTTC AGAGAAGTTT GAAAGAAACC GATACTCCTG CTTCTTCTGG AGGCTCCTTC CAGTTCCCGA CCAATCTTTC TGACACATTC ACCAAATCAG CTTCATCTCA AGAGGCAGCA GATGCTGTTA AGCCCTTCAA AGATGATCCG GCTAAACAAG AAAGATTTGA GCAGTTTCTC AAGGAGAAAT ACAAAGGAGG GTTACGTACA ACAGACTCCA ACAGAGTTAA CAGCATGTCG GAATCAGCTC GTGCTCAAGA GAGGTTGGAC TTTGAGGCTG CAGCTGAGGC AATTGAGAAA GGGAAAGCTT ACAAGGAGGT CAGACGGGCT ACTGAACAGC CTATCGACTT CCTTGCAGGA GGGCTGCAGT TTACTTCTGG CGGAACAGAG CAAATTAAAG ACACTGGCGT GGTAGACATG AAATCGAGTA AGACGTATCC TAAAAGGGAA GAGTTCCAAT GGCGTCCTTC ACCTCTTTTG TGCAAGCGTT TTGATCTCCC TGATCCGTTC ATGGGAAAGC TGCCACCTGC TCCGCGAGCG AGAAACAAAA TGGATTCTCT CATATTCTTG CCAGATACAG TGAAAGCTGC ATGTACACGT CAAGTATCTG AGTCGCAAGA ACCTAAGAAA GAGACATCAA TAGAAGAGCC TGAAGTTGAG GTAGAAGTGG AGAATGTGGA GAGGCCTGTT GATCTTTATA AGGCCATCTT CTCTGATGAT TCTGAAGATG ATGAAGATCA ACCAATAAAT GGAAAGATAC AAGAGGGTCA AGAAAAGAAG AATGAAGCGG CTGCAACCAC ATTAAACCGT CTAATAGCGG GTGACTTTCT TGAATCACTA GGGAAAGAAC TAGGGTTCGA AGTACCTTCT GATGTCCCAT ACCAGGAAGG AATCAAGCCA ATGGAAGAAG AGAGCAAGTC CAGAAGCAAA CCCGAAGACT CTTCTGATAA AAGACTTGAT CGATCGGGAA TGAAAGAGAA AGTGGAGGAG AAGAGAAGCA GCCTCATACT TGGGTCTGAA GAAGAAAAGA GTAGAAAAAA GAGAGAGAAA TCGCCAAGAA AAGGAAGTGG TGGCAACAAT CTATCATCGG GTGAATCCTC AGGAGATGAA CGGAGGAGAA AACGATCTAA TAAGAAGGAT AGACCCATTG ATTCAGAGAG CGATTCATCC AGCGACTACC ACAGCAGGGA TAAGCAAGGT TCAAGATCAA GAAGAAAGCG AAGAGAATCT TCTAGAGAGA AGAGAAGTAG CCACAAGAAG CACTCAAAGC ATCACAAGAC CAAGAAGTCA TCTTCTTCTC GGTATAGCTC AGACGAAGAA CAAAAAGAAT CAAGGCGAGA GAAGAAGAGG CGACGAGACT GAAACCTAAT CAAAGCTGTT GACTGATTAA ACTCGGGAGA TATCAGAGCA GTTGCATAGA TTTTTGTATG AACACTGAAA CAGCGTAGTT TCGAGGTATG CAATGAATGA TTCTCTGCAC TGTCTCGAGA TGGACACAGG TTAGATAGCA AATGATGAGC TTGTTGTTGG GTTCATTGTC TCCTATGAGG TAGAGAG |
| Length | 3047 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9313800.. 9319772 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23080.1 |
| Description | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein |
| TAIR curator summary | Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1. |
| Alias | [TGH][TOUGH] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.0995 |
Ahg488536 | SART-1 family |
| 12.7279 |
Ahg479045 | Protein kinase superfamily protein |
| 18.1108 |
Ahg946015 | proline-rich spliceosome-associated (PSP) family protein |
| 18.3303 |
Ahg478706 | WW domain-containing protein |
| 21.3542 |
Ahg473075 | |
| 27.1662 |
Ahg470503 | Helicase protein with RING/U-box domain |
| 28.9137 |
Ahg488176 | decapping 2 |
| 29.2404 |
Ahg491165 | xanthine dehydrogenase 1 |
| 31.8591 |
Ahg313379 | Plasma-membrane choline transporter family protein |
| 31.9374 |
Ahg910790 | Transducin/WD40 repeat-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|