| Annotation |
|---|
| Description | jgi|Araly1|489218|fgenesh2_kg.6__2352__AT5G23570.1 |
| Sequence |
AAAATGAGTT CTAGGGCTGG TCCAATGTCT AAGGGAAAGA ACGTTTCTCA GGGTGGTTCT AAGCCTGAGG TTGAACAGTT GGTGAAAGGT TTGGCTGGGA CGAAACTGGC TCCTTCACAA GATGATGGAG GAGAATGGGA GGTCATTTCC AAGAAGAACA AGAACAAACC TGGTAACACT TCTGGAAAAG CTTGGGTTTC TCAGAATTCG AACCCTCCTA GAGCTTGGGG TGGTCAGCAA CAAGGGAGAG GTAACAACGT AGCTGGGAGA GGTAATGGCA ATGGTCGGGG CACTCAAGCT AACATATCTG GTCGGGGACG AGCGTTGAGC AAAAAGTATG ATAACCACTT TGTGGCACCC CCACCTGTAA CTCGCCCTCC TTTGGAAGGT GGATGGAATT GGCAGGCAAG AGGAGGTTCT GCTCAGCACA CAGTTGTGCA GGAGGTTCCT AACATGGAGG ATGATCTGGA TAATGCTTCT GAGGAAGAGA ATGATTCCGA TGCTTTGGAT GATTCTGATG ACGATCTTGC AAGTGATGAT TATGACTCGG ATGTGAGTCA ACAGAGCCAT GGATCACGAA AGCAGAATAA GTGGTTCAAA AAGTTCTTCG ACAGCTTGGA TAGCTTGTCG ATCGAGCAGA TAAATGAACC GCAGAGGCAG TGGCATTGTC CAGCTTGTCA GAACGGACCT GGTGCCATCG ACTGGTATAA CCTGCACCCT CTACTAGCTC ATGCGAGGAC AAAAGGAGCT AGGCGAGTTA AGCTCCATAG AGAATTGGCT GAAGTTTTAG AAAAGGATCT AGAGATGAGA GGCGCATCTG TCATTCCTTG TGGTGAGATT TATGGGCAGT GGAAGGGTTT GGGTGAGGAC GAGAAGGATC ATGAAATTGT CTGGCCTCCA ATGGTCATCA TCATGAATAC TAGACTGGAC AAGGACGATA ATGATAAGTG GCTCGGCATG GGCAACCAAG AGCTGCTGGA ATACTTCGAC AAGTATGAGG CTCTTAGAGC ACGCCATTCC TATGGTCCAC AGGGCCATCG TGGGATGAGT GTTCTGATGT TTGAGAGCAG TGCCACTGGC TATTTGGAGG CTGAACGCCT CCACCGGGAG TTAGCTGAGA CAGGGTTAGA TAGAAACGCC TGGGTTCGTC GGCGCGGTAT GTTTTCTGGA GGTGTTCGCC AACTGTATGG CTTCCTTGCA ACCAAGCAAG ATCTGGACAT ATTCAATCAA CACTCTCAAG GCAAAACAAG GCTGAAATTC GAGATGAAAT CTTACCAAGA GATGGTTGTA AAGGAGCTGA GGCAGATCTC TGAGGACAAT CAGCAGCTGA ACTACTTTAA GAACAAGCTC TCAAAACAGA ACAAGCACGC CAAGGGTCTT GAGGAATCTC TGGAAATTAT GAGCGAGAGG CTGCGTGAAA CTGCAGAGAA TTATCGTATA GTGAGACAGA GAACAAAGAT GCAGCATGAA CAGAACAGAG AAGAGATGGA TGCACAAGAC AGGTTTTTCA AGGATGAAAT CAAACAGATA CATAAGAAAA GAGATGCAAA GGAGGAGAAT TTCGAGATGT TGCAGCAGCA GGAACGTGCC AAGGTTGTTG ACCAGCAGCA GAAGAACACC AATCCCTCTA GCAACGACGA TTTCCGAAAA AGAGCTGAGG AAGTGTCAAG CTTCATCGAG TTTCAAGAGA AAGAGATGGA GGAGTTTGTG GAGGAGAGGG AGATGCTGAT AAAAGAGCAA GAGAAGAAGA TGGCAGACAT GAAGACGAGG CATTACGAGG AGATGCTTGA TCTGGAGAAA GAGTTTGATG AGGCTTTGGA ACAGCTCATG TACAAGCATG GCCTTCACAA TGAAGATGAT TGAGACAAAG GAGGTCTGGT ACACAAGACA AGACTAAGTT TCTTTGTTTT GCTTTTGGTA TGTCGGCAAA TAGGAGATCT GAGAGAAAAT CTAAGGAGAT TATAGACTAC TATTATCCAA TTTTTAGTAG ACGGCTCTAA GGAAGCGGTA AGTTCTTGTG AC |
| Length | 2022 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9586581.. 9588998 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23570.1 |
| Description | XS domain-containing protein / XS zinc finger domain-containing protein-related |
| TAIR curator summary | Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. |
| Alias | [ATSGS3][SGS3][SUPPRESSOR OF GENE SILENCING 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg478823 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 2 |
Ahg359344 | |
| 3.4641 |
Ahg473330 | |
| 4.24264 |
Ahg488046 | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein |
| 4.89898 |
Ahg950512 | |
| 5.47723 |
Ahg495917 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 5.47723 |
Ahg320991 | alpha/beta-Hydrolases superfamily protein |
| 7.4162 |
Ahg477487 | TCP-1/cpn60 chaperonin family protein |
| 8.06226 |
Ahg487918 | Cystathionine beta-synthase (CBS) family protein |
| 8.30662 |
Ahg474533 | GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|