| Annotation |
|---|
| Description | jgi|Araly1|492777|fgenesh2_kg.7__2210__AT4G21100.1 |
| Sequence |
CGTTTAAATC TCAAAGAGAA CCCAGAAGCT TCTTATAAAA GAGGCGGGAA ATTTCTCACG CGTGTTGCAT TTTTCTGGGC CAAGAAGAAA ATGAGCGTAT GGAACTACGC CGTTACGGCT CAAAAACCGA CCTGTGTCAC TCACTCTTGC GTCGGAAACT TCACCAGTCC TCAAGAACTC AATCTCATTG TTGCGAAATC CACTCGAATC GAGATCCATC TGCTTTCTCC ACAGGGACTT CAGACTATAC TGGATGTTCC TCTATATGGG AGGATCGCCA CTTTGGAATT GTTCCGTCCC CATGGTGAAG CACAAGATTT TTTGTTTGTT GCAACTGAGA GATATAAATT CTGCGTTCTT CAATGGGATT ATGAGTCCTC TGAGCTTATA ACAAGGGCAA TGGGGGATGT TTCTGATCGT ATAGGCCGAC CGACGGACAA TGGTCAGATT GGTATAATTG ATCCTGATTG CAGATTAATT GGTCTGCATC TGTATGACGG CTTGTTTAAG GTCATTCCAT TTGACAATAA AGGACAGCTC AAGGAAGCTT TTAACATAAG GCTGGAGGAG TTGCAGGTCC TAGATATCAA GTTTCTGTAT GGATGCACGA AGCCAACAAT TGCAGTACTT TATCAGGACA ACAAAGATGC TCGTCATGTC AAAACATATG AAGTTTCTCT AAAGGAGAAG GACTTTGTCG AAGGTCCATG GTCACAGAAC AATCTCGATA ATGGTGCTGA CTTATTGATC CCTGTACCTT CTCCTCTGTG TGGCGTCCTC ATCATTGGAG AAGAAACAAT TGTCTATTGT AGTGCCAATG CATTCAAAGC AATCCCAATA AGACCTTCCA TCACAAAAGC ATATGGAAGA GTTGATCTTG ATGGTTCTAG GTATCTTCTT GGTGACCATA CCGGACTGAT TCACCTGCTT GTTATAACCC ATGAGAAAGA AAAGGTCACT GGCCTCAAAA TTGAGCTTTT GGGTGAAACC TCTATTGCAT CTTCCATCTC GTATCTTGAC AATGCTGTCG TCTTTGTCGG TTCAAGCTAT GGAGATTCAC AGCTTATTAA GCTAAACTTG CAACCGGATG CAAAAGGTTC ATACGTAGAA ATTTTAGAAA AGTATGTCAA CCTGGGGCCT ATTGTTGACT TCTGTGTAGT TGACCTTGAG AGACAGGGGC AAGGTCAGGT TGTAACTTGC TCTGGAGCAT ACAAGGATGG TTCTCTTCGC ATAGTTCGCA ATGGGATAGG AATAAATGAA CAGGCGTCCG TGGAACTTCA AGGCATCAAA GGAATGTGGT CGTTGAAATC GTCAATTGAT GAAGCCTTTG ATACATTCCT TGTAGTTAGT TTTATCAGTG AAACTCGTAT ACTAGCCATG AATATAGAGG ATGAACTGGA AGAAACAGAG ATTGAAGGTT TCTTGTCTGA AGTGCAGACT TTATTTTGCC ATGATGCTGT CTACAACCAA CTTGTACAGG TTACCTCAAA TTCTGTTAGA TTAGTTAGTT CTACAACTAG AGAATTGCGG AATAAGTGGG ATGCCCCAGC TGGATTCGCT GTTAATGTTG CAACTGCAAA TGCTAGCCAG GTGCTTTTGG CCACTGGAGG TGGGCATTTG GTCTATCTAG AAATTGGGGA TGGGACATTG ACGGAAGTCA AACATGTCCT GTTGGAGTAC GAGGTTTCCT GTCTTGACAT AAACCCCATT GGCGATAATC CTAATTACAG TCAGCTAGCT GCAGTCGGGA TGTGGACTGA TATAAGTGTG AGGATTTTTG TGCTGCCGGA CTTGACTCTT ATTACTAAGG AGCAACTAGG AGGAGAGATA ATTCCCCGAT CTGTTCTTCT TTGTGCATTT GAAGGGATAT CTTACTTGCT CTGTGCTCTT GGAGATGGTC ATCTCTTAAA CTTCCAGTTG GATACAAGTA GCGGGAAATT AAGAGACCGG AAAAAAGTAT CACTTGGGAC TCAGCCTATA ACTCTGCGTA CTTTTTCATC TAAAAGTGCA ACGCATGTCT TTGCTGCATC AGATAGACCA GCTGTTATAT ATAGCAACAA CAAGAAGCTG TTATACAGCA ACGTGAATCT GAAAGAAGTT AGTCATATGT GTCCCTTCAA CTCTGCTGCT TTTCCAGACA GTCTAGCAAT TGCAAGGGAA GGCGAACTTA CAATTGGCAC CATCGATGAC ATTCAGAAGC TTCACATACG TACCATTCCT ATTGGAGAGC ATGCTCGTCG CATATGCCAT CAGGAACAAA CACGGACATT TGCTATCTGC TGTTTGAGAA ACCAACCAAG TGCAGAAGAA TCTGAAATGC ATTTTGTCCG TCTGCTGGAT GCCCAAAGTT TCGAGTTCTT GTCAACTTAC CCTTTGGATG CCTTTGAATA CGGTTGCTCC ATATTGAGCT GCTCGTTTAC AGACGACAAA AATGTCTATT ATTGTGTTGG TACGGCATAT GTTTTGCCCG AGGAAAATGA ACCCACTAAG GGAAGGATAC TGGTGTTTAT AGTTGAAGAA GGGAGATTGC AGCTTATTAC AGAGAAGGAA ACCAAGGGAG CTGTTTATTC TCTCAATGCC TTCAACGGCA AACTTCTTGC TGCTATTAAT CAAAAAATTC AGTTGTATAA GTGGATGCTA CGGGATGATG GCACTCGCGA GCTGCAGTCT GAATGTGGAC ATCACGGTCA CATACTAGCT CTCTACGTGC AGACCCGTGG AGACTTCATC GTCGTTGGTG ACCTCATGAA ATCAATCTCT TTATTGATCT ACAAGCACGA GGAAGGTGCG ATCGAGGAAA GAGCTCGGGA CTATAATGCA AACTGGATGG CGGCAGTTGA GATACTCGAT GATGACATCT ACCTCGGTGC TGATAATTGC TTCAACCTAT TCACAGTAAA GAAGAACAAT GAAGGTGCCA CAGATGAAGA ACGGGCTCGT ATGGAGGTCG TTGGTGAGTA TCACATAGGG GAATTTGTGA ACCGATTCCG CCATGGCTCT CTTGTTATGA GGCTTCCTGA TTCAGAGATT GGTCAGATAC CGACCGTCAT ATTTGGCACT GTCAGTGGGA TGATTGGAGT GATAGCTTCT CTGCCTCAAG AACAGTATGC GTTTCTAGAG AAACTGCAGA CGAGTCTGAG GAAAGTGATT AAAGGAGTTG GTGGTCTAAG CCACGAGCAA TGGAGATCAT TCAACAACGA GAAAAGAACT GCGGAAGCAA AGAGTTACTT GGATGGAGAT CTAATTGAAT CGTTCTTGGA TTTGAGCAGA GGTAAGATGG AGGAGATCTC TAAAGGTATG GATGTCCAAG TGGAAGAGTT GTGCAAGAGA GTTGAAGAAC TAACTAGGCT TCACTGA |
| Length | 3357 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 8842392.. 8849059 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G21100.1 |
| Description | damaged DNA binding protein 1B |
| TAIR curator summary | One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase. |
| Alias | [DDB1B][damaged DNA binding protein 1B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.32456 |
Ahg488768 | TCP-1/cpn60 chaperonin family protein |
| 6.48074 |
Ahg479261 | |
| 11.4891 |
Ahg489043 | Ubiquitin carboxyl-terminal hydrolase family protein |
| 12.2474 |
Ahg486562 | dihydrodipicolinate synthase 1 |
| 13.4907 |
Ahg472990 | DEAD/DEAH box RNA helicase family protein |
| 15.0997 |
Ahg475871 | SRP72 RNA-binding domain |
| 16.7332 |
Ahg494795 | SET domain protein 25 |
| 18.5203 |
Ahg479579 | SMAD/FHA domain-containing protein |
| 21.9089 |
Ahg486142 | embryo sac development arrest 7 |
| 22.2711 |
Ahg923871 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|