Detail



ID : Ahg494037

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|494037|fgenesh2_kg.7__3470__AT5G39500.1
Sequence
ATGGGGTATC AGAATCATTC TTCGGGAAGT AACTCGTTCC ATGGAGAGTT CAAGAGTTGT CACTCCAAAC CGTCTAAGGG TGCGGTGGCA TCCATGATTA ATTCTGAAAT TGGTGCAGTT TTGGCTGTGA TGAGGAGAAA TGTACGGTGG GGTGTTCGTT ATATTGCAGA TGATGATCAG TTAGAGCATT CTCTTATCCA TTCTTTAAAA GAATTGCGTA AGCAGATATT TTCATGGCAA AGCAATTGGC AATATGTTGA CCCGAGATTG TACATACAGC CCTTTTTGGA TGTTATATTG TCTGATGAAA CTGGTGCTCC AATTACTGGC GTTGCGTTGT CATCTGTCTA CAAGATCTTA ACCCTTGAGA TTTTTACCCT TGAAACCGTG AATGTGGGAG AGGCAATGCA TATCATAGTT GATGCTGTAA AAAGCTGTCG TTTCGAGGTT ACTGATCCAG CCTCAGAGGA AGTGGTTCTG ATGAAGATAC TTCAAGTTCT GCTGGCTTGC GTAAAGAGTA AGGCCTCTAA TGGATTGAGT AATCAAGACA TTTGCACCAT CGTCAACACT TGTTTGCGCG TTGTTCATCA ATCAAGCTCC AAAAGTGAAT TGTTGCAGCG TATAGCTCGC CACACAATGC ATGAGTTGAT TAGATGTATC TTCTCTCAAC TTCCTTTTAT CAGCCCCTTG GCTAATGAAA GTGAATTACA TGTCGACAAG AAGGTGGGAA TAGTGGACTG GGATCAGAAT TCTGGAGAAA AAAGGGTTGA AAATGGAAAT ATTGCTAGTG TATCTGATAC TCTCGGCACT GACAAAGATT CTCCAAGTTC TGAGATGGTT ATTCCAGAAA CAGAACTTCG AAATGATGAA AAGAAAACTG AGGTCAGCGA TGACTTGAAT GCTGATGCAA ATGGTGAAAA TGCAATGATG GCGCCTTTTG GTATTCCATG CATGGTAGAG ATTTTTCATT TCTTGTGTAC GCTGTTGAAT GTTGGAGAAA ACGGTGAAGT CAATTCCAGA TCCAACCCAA TAGCGTTTGA TGAAGATGTT CCTCTTTTCG CTCTGGGTTT AATTAATTCT GCTATAGAAC TTGGAGGGCC TTTTTTCCGT GAGCACCCAA AGCTGTTGAC TTTGATTCAG GATGAGTTAT TCTGTAACTT GATGCAGTTT GGTATGTCCA TGAGCCCTCT GATTCTTTCT ACAGTTTGCA GCATCGTTCT TAATCTCTAC TTGAATCTCC GTACTGAGCT TAAGGTACAG CTTGAAGCTT TCTTTTCATA TGTACTTCTG AGGATTGCAC AGAGCAAACA TGGTTCTTCT TATCAGCAAC AGGAGGTGGC TATGGAGGCT CTGGTTGATC TTTGCAGACA ACATACTTTC ATAGCTGAAA TGTTTGCAAA TTTCGATTGT GATATAACCT ACAGTAATGT GTTTGAAGAT GTTTCAAACC TGCTATCAAA GAGTGCCTTC CCAGTTAATG GGCCTATATC TGCTATGCAT ATACTTGCAT TGGATGGGTT AATTTCTATG GTTCAGGGAA TGGCTGAGAG AGTAGGTGAA GAATTGCCGG CTTCAGATGT TCCTACACAT GAAGAAGGAT ATGAAGAATT CTGGACAGTG AGATGTGAGA ATTACGGAGA TCCTAATTTT TGGGTTCCCT TTGTCCGAAA GGCAAAGCAC ATAAAGAAAA AGCTGATGCT TGGGGCTGAT CATTTTAACC GTGATCCTAA AAAAGGCTTA CAGTATCTTC AAGGGATGCA CTTGTTGCCC GAGGAACTTG ATCCAAAGAG TGTGGCATGT TTCTTCAGGT ATACATGTGG GTTAGATAAG AATCTTATAG GAGATTTCCT CGGAAATCAT GACCAGTTCT GTATTCAGGT GCTTCATGAG TTTGCCAAGA CGTTCGACTT CCAGAACATG AATCTTGCTA CCGCCCTGCG TCTCTTTGTG GGTACATTTA GATTGCCTGG CGAGGCACAG AAGATACAGA GGGTGCTGGA GGCGTTTTCT GAGAGATACT ATGAGCAGTC ACCACATATA CTGATTGATA AAGATGCTGC CTTTGTGTTA GCTTACTCGA TTATCTTGCT GAACACAGAT CAGCACAACG CCCAGGTGAG GACAAGGATG ACTGAAGAAG ATTTCATCCG TAACAACAGG ACAATAAATG GAGGCGCAGA CCTTCCTAGA GAGTACCTAT CTGAGATTTA TCATTCAATC CGCCACAGTC AGATTGAGAT TGAGATGAAC TCAGATGAGG GAACCGGCTT CCAACTGATG ACAGCCAGTC GTTGGATTAG TGTGATTTAC AAATCCAAAG AAACCAGTCC CTATATCCAA TGTGACACTG CATCCCATCT GGACCGTGAC ATGTTTTATA TCGTGTCTGG TCCCACTATT GCTGCTACAT CAGTGGTTTT TGAGCAAGCA GAGCAAGAAG ATGTTTTGCA GAGATGTATT GATGGGTTAT TGGCCATTGC AAAACTTTCA GCATATTATC ATTTGAATAG TGTTTTGGAT GATCTGGTTG TGTCTCTCTG CAAATTCACA CCCTTCTTCG CCCCATTATC TGCTGATGAA GCTGTTCTTG CTCTAGGAGA AGATGCCAGA GCCAGAATGG CTACTGAAGC TGTTTTCTTG ATTGCAAGTA AATATGGTGA CTATATTAGT TCGGGCTGGA AAAACATATT GGAATGTGTC TTGAGCCTCA ATAAACTCCA CATTTTACCA GATCATATAG CTAGTGATGC AGCGGATGAC CCAGAGCTGT CAACTAGTAG CTTGGAGCAA GAAAAACCTT CGGCAAATCC CCTGCCAGTC GTATCACAGT CACAACCCTC AGCGACGCCT CGAAAATCAT CTAGTTTTAT TGGTCGGTTT CTCATGTCTT TTGATTCTGA GGAGACAAAG CCATTACCAA CCGAGGAAGA ACTGGCAGCT TATAAACATG CTCGTGGGAT AGTGAAAGAT TGTCATATTG ATAGCATATT CTCAGACAGC AAGTTTCTCC AAGCTGAGTC TCTGCAGCAG CTTGTTAACT CTCTTATAAA AGCATCCGGG AAAGATGAAG CTAGTTCAGT CTTTTGCCTG GAGCTTCTAA TTGCAGTAAC TCTGAACAAC CGAGACAGAA TCCTTCTGAT TTGGCAAACT GTTTATGAGC ATATCTTGGG TATAGTACAA CCAACATTAA CACCATGCAC GCTTGTTGAA AAGGCTGTTT TTGGTGTACT GAAGATTTGC CAGAGATTAT TACCATACAA GGAAAACCTA ACAGATGAAC TTCTGAAATC ACTCCAACTG GTTCTCAAGC TTAAACCAAG AGTGGCTGAT GCATACTGCG AACGCATTAC ACAAGAAGTT GTCCATCTTG TAAAAGCAAA CGCATCTCAC ATTAGATCCC ATACTGGTTG GCGAACGATC ATATCTCTGC TATCAATCAC AGCTCGGCAT CCAGAAGCTT CTGATGCGGG ATTCGAAGCC CTCCGGTTTA TAATGTCAGA AGGAGCTCAC TTGTTACCAT CAAACTACGA GCTCTGTTTG GATGCAGCTA AGAACTTTGC TATATCCCGA GTTGGTGAAA TCGATCGGTC CATCTCAGCA ATTGACTTAA TGTCAAACTC TGTGTTTTGT CTTGCAAGAT GGTCTCAAGA GGCGAAAAAC TCGATTGGTG AAACTGATGC CATGATGAAA CTAAGTGAAG ATATTGGAGA AATGTGGCTC GCACTTGTGA ACAAGCTCCA AATAGTATGT TATGATCAAC GCGACCAAGT GAGAAACCAT GCAATTTTGA TGCTGCAACG AGCTATAGCT GGTGCAGACG GGATCATGTT ACCACAACCT ATATGGTTCC AATGCTTTGA TTCCGCAGTC TTCCCATTGC TAGACAAATC GCTCGCTTTT GCAATCGAGA ATTCAAGGAA GAATTTCAAG AAAACAGTTG AAGAAACGCT TGTTCTCGCG ACAAAGCTCA TGTCAAAAGC TTTTCTTCAA TCTCTTCAAG ACATCTCACA GCAACCATCA TTCTGCAGAC TTTGGGTTGG TGTCTTGAAC CGTTTGGAAA CTTACATGTC AACCGAATTC AGAGGAAAAC GCAGCGAGAA AGTCCATGAA CTCATCCCTG AACTGCTCAA GAACACATTG CTGGTAATGA AGGCGACGGG AGTTTTATTA CCAGGTGTTG ATATCGGAAG TGACAGTTTC TGGCAACTAA CGTGGCTTCA CGTTAAGAAG ATCTCTCCTT CTCTGCAATC TGAAGTTTTC CCACAAGAGG AGCTCGATCA GTTTCAGAGA CGAAACGCAA AGCCTGAGGA TTCTCCGGTA CCGGAAAACG AGGCCTGAGA GACGGTGGTG GAATAGAGAA AAATTGTTCT ATACAGATGA AAAAGCATAT TCAAGAATAT CGAAATTTTT TTTGCAGTAT AGCTTTTTTG TTTTTAATAT AGGGGATTAT ATAATACTTT GGAGTCTG 
Length4468
Protein Sequence
Protein Residue
Map Locationscaffold_7: 21729323.. 21734033
Download Sequence
A.thaliana
AGI-codeAT5G39500.1
DescriptionGNOM-like 1
TAIR curator summaryEncodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family. Required for endoplasmic reticulum (ER) morphology.
Alias[ERMO1][GNL1][ENDOPLASMIC RETICULUM MORPHOLOGY 1][GNOM-like 1]
Gene coexpression
MR
MR Locus Description
9.79796 Ahg483365
12.7279 Ahg486889 HEAT repeat ;WD domain, G-beta repeat protein protein
13.7113 Ahg895977 RNA polymerase II transcription mediators
14.4222 Ahg939389 F-box/RNI-like superfamily protein
17.2916 Ahg921494 Galactose oxidase/kelch repeat superfamily protein
18.1659 Ahg488249 SWIB/MDM2 domain superfamily protein
18.412 Ahg903021 auxin transport protein (BIG)
27.7489 Ahg472334 U5 small nuclear ribonucleoprotein helicase, putative
29.6985 Ahg932069 Coatomer, alpha subunit
30.7246 Ahg951457 Tetratricopeptide repeat (TPR)-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression