| Annotation |
|---|
| Description | jgi|Araly1|939389|scaffold_503580.1 |
| Sequence |
TCTCGAGGTT ATTTGGCCGC AATGCAGAAG CGAATAGCCT TGTCGTTTCC AGAAGAGGTG CTTGAGCATG TATTCTCGTT TATTCAGCAG GATAAGGATA GGAACTCGGT CTCTCTGGTG TGCAAGTCAT GGTACGAGAT CGAGCGTTGG TGCAGGAGGA AAGTCTTCAT CGGGAACTGT TACGCCGTGA GTCCAGCGAC GGTGATTAGG AGGTTCCCGA AAGTGAGATC CGTGGAGCTC AAGGGGAAAC CTCACTTTGC TGACTTTAAT TTGGTACCCG ACGGATGGGG AGGTTACGTG TATCCATGGA TTGAGGCCAT GTCGTCGTCT TACACGTGGC TTGAAGAGAT AAGGCTGAAG AGGATGGTGG TGACCGACGA TTGCTTGGAG CTCATAGCCA AGTCCTTTAA GAATTTCAAG GTTCTTGTGC TTTCTTCCTG CGAAGGCTTC TCCACCGATG GTCTCGCTGC TATCGCTGCC ACTTGCAGGA ATCTGAAAGA GCTTGATTTA CGCGAGAGTG AGGTTGACGA TGTTAGTGGC CATTGGCTTA GCCATTTCCC AGATACTTAC ACATCTTTGG TATCACTCAA TATCTCTTGC TTAGCATCTG AGGTCAGTTT TTCTGCTCTG GAAAGGCTGG TGACTAGGTG TCCCAATCTC AAGTCTCTCA AGCTTAACCG ATCTGTTCCC CTTGAAAAAT TGGCTACTTT AATTCAAAGA GCTCCTCAAT TGGAGGAATT GGGCACTGGT GGGTACACTG CAGAAGTCCG ACCAGATGTT TATTCTGGTT TATCTGTAGC GCTCTCTGGA TGCAAGGATT TGAAGTGCTT ATCTGGATTT TGGGATGCTG TTCCTGCCTA TCTTCCAGCT GTTTATTCAG TTTGCAGTCG GCTTACAACT TTGAATCTGA GTTATGCAAC AGTCCACAGC TATGATCTTG TCAAGCTACT TAGTCAATGC CCAAAACTGC AGCGCCTCTG GGTGCTTGAC TACATTGAGG ATGCTGGTCT TGAGGTGCTT GCTTCAACCT GCAAGGACCT ACGCGAGCTC AGAGTGTTTC CGTCTGAGCC TTTTGTCATG GAACCAAATG TGGCATTGAC GGAACAGGGG CTTGTCTCCG TCTCCATGGG CTGTCCAAAA CTCGAGTCGG TTCTCTACTT CTGCCGTCAA ATGACCAATG CTGCATTGAT AACCATTGCT AGGAACCGTC CCAACATGAC TCGCTTCCGC TTGTGCATCA TTGAGCCAAA AGCTCCAGAC TATCTGACTC TAGAGCCACT GGATGTTGGA TTTGGAGCCA TAGTAGAGCA CTGCAAAGAT CTCCGTCGCC TCTCTCTATC TGGCCTCTTG ACCGACAAGG TTTTTGAATA CATTGGGACA TATGCCAAGA AGATGGAAAT GCTCTCAGTG GCATTTGCAG GAGACAGTGA CTTAGGCATG CATCATGTTT TGTCGGGGTG CGATAGCCTG AGGAAACTAG AGATAAGGGA CTGCCTGTTT GGAGACAAGG CGCTTTTGGC CAATGCTTCA AAGCTGGAGA CAATGCGATC CCTTTGGATG TCTTCTTGTT CCGTGAGTTT TGGAGCCTGC AAGTTATTAG GACAGAAGAT GCCAAAGCTG AATGTGGAAG TCATCGATGA ACGGGGTCCA CCGGACTCGA GACCAGAGAG CTGCCCTGTG GAGAGAGTGT TCATTTACCG AACAGTGGCA GGTCCTCGGT TTGACATGCC TGGCTTCGTC TGGAACATGG ACCAAGACTC AACAATGAGG TTTCCAGGAA AATCATCACT ACTAACGGAT TATAAGACAA ATAAACGAGG TACATTTTTC ATTAATCCTT GTTCATCATC CCATATAATC GTGTTCCGGT TTAGGAACAT GAGAGAGCTC TCGGTCGCCA ATAATTTGAT TCTCGGCTGC TTCATATAAC CATCAAGCTC ATGAGCAAT |
| Length | 1949 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 19843448.. 19846242 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G62980.1 |
| Description | F-box/RNI-like superfamily protein |
| TAIR curator summary | Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. |
| Alias | [AtTIR1][TIR1][TRANSPORT INHIBITOR RESPONSE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg470295 | FZO-like |
| 5.2915 |
Ahg493452 | nuclear factor Y, subunit B3 |
| 6.245 |
Ahg473146 | Kinase-related protein of unknown function (DUF1296) |
| 6.245 |
Ahg475318 | pyruvate dehydrogenase complex E1 alpha subunit |
| 7.61577 |
Ahg933639 | TCP domain protein 10 |
| 8.48528 |
Ahg474768 | |
| 9 |
Ahg316570 | hydroxy methylglutaryl CoA reductase 1 |
| 9.16515 |
Ahg318673 | paralog of ARC6 |
| 10.7238 |
Ahg317700 | ARM repeat superfamily protein |
| 11.5326 |
Ahg919131 | MOS4-associated complex 3A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|