Detail



ID : Ahg472334

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|472334|fgenesh2_kg.1__2288__AT1G20960.1
Sequence
TTTAGGTCGA TTTTTAGGAG ATAGAGGACG TGAGAAGGGA GAAGAAATCT GAATCTCCCA TTAGGGTTTC TTCTAGTAGA TTGATTCGTT GCCGAGAGTG AAGCTAAGAA GAGATTTCGT TTCGTAGCTG TTTCGGTTTT CGGATTTGGT GATGGCGAAC TTGGGAGGCG GTGCGGAAGC ACATGCCAGG TTCAAGCAGT ATGAGTATAG AGCCAATTCT AGTCTGGTGT TAACTACTGA TAATCGTCCT CGCGATACTC ATGAGCCTAC AGGAGAACCG GAAACTCTGT GGGGGAAAAT TGATCCGAGG TCTTTTGGTG ACCGTGTTGC TAAGGGGAGG CCTCAGGAGT TGGAGGATAA GCTTAAAAAG TCTAAGAAGA AGGAACGTGA TGTTGTTGAT GATACTGCTA ATGTTAGGCA GAGTAAGAGG CGTCGTCTAA GGGAAGAGAG CGTTCTAACT GATACTGATG ATGCGGTTTA TCAGCCGAAG ACTAAGGAGA CTAGGGCTGC TTATGAGGCC ATGCTTAGTC TAATTCAGCA GCAGTTGGGT GGGCAACCTC TGAGTATTGT TAGTGGTGCT GCAGATGAGA TTTTGGCGGT TCTCAAGAAC GATACATTTA GAAACCCTGA GAAAAAGATG GAGATCGAGA AGTTGCTGAA CCATATTGAA AACCATGAGT TTGATCAGCT TGTTTCCATT GGAAAGCTGA TCACGGACTT TCAAGAGGGT GGTGATTCTG GTGGTGGTAA AGCTGATGAC GATGAAGGAC TTGATGATGA TTTGGGCGTG GCTGTTGAAT TTGAGGAGAA TGAAGAAGAC GATGATGAGA GTGATCCCGA TATGGTTCAA GAGGAAGATG ATGAGGAGGA TGAAGAGCCT ACCAGAACTG GAGGCATGCA GGTTGATGCT GGGATCAATG ATGAGGATGC AGGAGATGCA AATGAGGGCG CAAATCTTAA TGTTCAAGAC ATTGATGCAT ATTGGCTCCA GAGAAAGATC TCTCAAGCAT ATGAACAGCA GATTGATCCA CAACAATGCC AGGTACTTGC AGAAGAGCTG CTTAAGGTAC TCGCTGAAGG GGATGATAGG GTTGTTGAGA ACAAGCTGCT TATGCACCTT CAGTTCGAAA AGTTTAGCCT TGTTAAGTTT CTGCTGCGGA ATCGTCTTAA AGTTGTGTGG TGCACTCGTT TGGCTAGGGC AGAAGACCAG GAAGAGAGGA AGAGAATTGA GGAGGAGATG AGGGGGTTGG GCCCAGAGTT GACAGCTATT GTGGAGCAGT TGCATGCAAC AAGAGCAACA GCGAAAGAGA GGGAGGAGAA CCTGCAAAAA AGTATTAACG AAGAAGCCCG ACGTTTGAAG GACGAAACTG GTGGAGATGG AGGCAGAGGC AGGAGAGATG TTGCTGACAG AGATTCAGAG AGTGGCTGGG TGAAGGGTCA GCGTCAGATG CTGGACCTGG AGAGCTTGGC TTTTGACCAA GGTGGTCTCC TGATGGCGAA TAAGAAGTGT GACCTTCCCC CTGGCTCTTA CAGAAGTCAT GGCAAGGGAT ATGATGAAGT TCATGTGCCA TGGGTTTCTA AAAAGGTCGA TAGCAATGAG AAGCTTGTGA AGATTACGGA AATGCCTGAT TGGGCGCAAC CGGCTTTTAA GGGAATGCAA CAGTTAAACA GGGTTCAGAG CAAAGTGTAT GACACTGCAC TTTTTAAGGC AGAGAACATT CTTCTTTGTG CTCCAACTGG TGCTGGGAAA ACCAATGTTG CTATGCTCAC CATACTGCAG CAACTTGAAA TGAATAGGAA CAAAGATGGA ACTTATAACC ATGGAGATTA CAAAATTGTC TATGTTGCAC CCATGAAAGC CCTTGTTGCT GAAGTTGTAG GTAATTTGTC TAATCGTCTG AAGGATTATG GAGTTACTGT GAGAGAACTC AGTGGGGATC AGTCCTTAAC CGGGAGAGAA ATTGAAGAGA CTCAGATAAT TGTTACAACA CCAGAGAAAT GGGATATCAT CACTAGGAAG TCTGGAGACC GAACTTACAC TCAGCTTGTA AGACTTCTTA TAATTGATGA AATTCATCTC CTTCATGATA ATCGAGGGCC TGTGCTTGAA AGCATTGTCG CTAGGACTCT TAGGCAAATT GAAACCACGA AAGAGAATAT TCGTCTGGTT GGTTTATCTG CTACACTGCC AAATTATGAA GACGTAGCCT TGTTTTTGCG GGTTGATCTT AAGAAAGGTT TGTTTAAATT TGACCGCAGC TACAGACCCG TGCCTCTCCA TCAGCAGTAT ATTGGAATCA CTGTGAAAAA ACCGTTGCAG AGGTTCCAGT TGATGAATGA TCTATGCTAT CAGAAAGTTT TGGCAGGTGC TGGAAAGCAC CAGGTCCTTA TTTTTGTTCA TTCAAGGAAG GAAACAGCGA AAACTGCTAA AGCAATACGG GACACTGCAA TGGCAAACGA TACCCTCAGC AGATTCTTGA AGGAAGATAG TGTAACTCGT GAAGTTCTCC AGAGTCATGT TGACATTGTT AAAAATGGTG AGCTGAAAAA TATTCTGCCT TACGGTTTTG CAATTCATCA TGCTGGGTTA ACAAGGGGTG ATCGTGAGAT CGTTGAGAAT CTTTTTGCTC AGGGGCATGT GCAAGTCTTG GTTTCCACAG CAACTCTTGC ATGGGGTGTG AATCTGCCTG CACATACCGT TATTATAAAA GGAACCCAGG TGTATAATCC TGAAAAAGGG GCGTGGATGG AGCTGAGTCC TCTAGATGTT ATGCAGATGC TTGGTCGTGC TGGAAGACCT CAGTATGATC AACACGGGGA GGGTATAATT ATCACTGGCT ACAGCGAGCT GCAATATTAT CTTTCTTTGA TGAATGAGCA ACTACCTATT GAAAGCCAGT TTATTTCCAA ACTTGCTGAC CAGCTTAATG CTGAAATTGT GCTTGGAACC GTTCAGAATG CTAGAGAGGC TTGCCATTGG CTTGGTTATA CGTATTTATA TATCCGTATG GTTCGTAATC CAACGCTGTA TGGCTTAGCG CCTGATGCCC TTGCAAAAGA CGTAGTGTTG GAGGAGAGAA GAGCTGACCT GATACATTCG GCTGCTACTA TCTTGGACAA AAACAACTTG GTTAAGTATG ACAGGAAAAG TGGATACTTC CAAGTTACAG ATTTGGGACG CATTGCTAGC TACTATTACA TAACCCATGG GACCATAGCT ACATACAATG AGCATTTGAA GCCAACAATG GGTGATATAG ATCTTTATCG TCTGTTCTCC CTGAGTGAAG AGTTCAAGTA TGTGACGGTT CGGCAAGATG AGAAGATGGA ACTGGCGAAA CTTTTGGATC GTGTCCCGAT TCCGATCAAG GAAACTTTGG AGGAGCCCAG TGCAAAAATA AATGTATTGC TGCAGGCATA TATTTCACAG CTAAAGCTTG AGGGTCTTTC TTTGACATCT GACATGGTTT ACATTACTCA GAGTGCTGGA CGTCTTGTGC GAGCTCTTTA TGAAATTGTA TTGAAGCGGG GATGGGCTCA ACTGGCAGAG AAGGCTCTGA ACTTGTCTAA AATGGTTGGG AAGAGGATGT GGAGTGTCCA GACACCCCTG CGTCAGTTTC ATGGAATCCC CAATGATATT TTAATGAATT TGGAGAAGAA GGATTTGGTG TGGGAGAGGT ACTATGATCT ATCCTCACAG GAGCTAGGAG AGCTTATTCG TAGTCCTAAG ATGGGCAGGC CGCTTCACAA GTTCATTCAC CAGTTCCCAA AATTGACTCT TTCTGCACAT GTTCAGCCTA TTACTCGCAC TGTTCTGAAG GTGGAGCTCA CAGTTACACC TGATTTCCTG TGGGACGAGA AAATTCATAA ATATGTTGAG CCGTTTTGGA TAATTGTGGA AGACAATGAT GGTGAAAAGA TCCTTCATCA CGAGTATTTT CTTTTGAAGA AGCAGTATAT TGATGAGGAT CACACTTTGA ACTTCACTGT GCCAATCTTT GAACCGCTGC CACCTCAGTA TTTTGTTCGA GTGGTTTCAG ACAAGTGGCT TGGCTCGGAG ACTGTGTTGC CTGTATCTTT CAGGCATCTT ATTCTTCCAG AAAAGTATCC ACCTCCGACA GAGCTACTGG ACTTGCAGCC TCTCCCAGTG ACGGCGCTAA GGAATCCGAA TTATGAGATA CTCTATCAGG ATTTCAAGCA TTTCAATCCA GTGCAGACTC AGGTCTTTAC CGTTTTGTAT AACACTAACG ACAATGTGTT GGTTGCTGCT CCAACGGGAA GTGGGAAAAC TATTTGTGCG GAGTTCGCTA TTTTGAGGAA TCATCAAGAA GGACCTGATG CTACAATGCG TGTTGTTTAT ATTGCACCGC TTGAGGCTAT TGCCAAGGAG CAGTTTCGTA TCTGGGAGGG GAAGTTTGGG AAGGGTCTTG GTTTACGGGT TGTTGAGCTA ACTGGGGAGA CATCATTGGA TCTTAAGCTG CTTGAGAAAG GCCAGATAAT CATAAGTACT CCTGAGAAAT GGGATGCTCT TTCCCGCAGG TGGAAACAGA GAAAATACGT TCAACAAGTT AGTCTTTTCA TCGTCGACGA ACTCCATCTA ATTGGAGGTC AAGGTGGTCC AGTGTTGGAG GTAATCGTCT CCAGAATGAG ATATATTTCA AGTCAGGTCA ATAATAAGAT CAGGATTGTT GCGCTATCCA CTTCACTTGC AAATGCAAAA GATCTTGGGG AGTGGATTGG GGCCAGTTCC CACGGCCTTT TCAACTTCCC TCCTGGCGTC CGTCCTGTTC CACTGGAGAT CCACATTCAG GGAGTGGATA TATCCAGTTT TGAAGCCAGG ATGCAGGCGA TGACCAAGCC AACCTACACC GCCATAGTTC AGCACGCCAA GAACAAGAAG CCGGCTATTG TTTTCGTCCC AACCCGTAAA CATGTCCGCT TGACTGCTGT GGATCTGATG GCTTATTCTC ACATGGATAA CCCGCAGAGT CCTGATTTCT TGTTAGGGAA ACTGGAAGAA CTGGACCCTT TTGTTAGCCA AATCCGCGAG GAAACACTGA AGGAGACACT GCGTCATGGT ATTGGGTACT TGCATGAGGG TTTAAGCAGT CTGGATCAGG AGATTGTGAC ACAGCTCTTT GAAGCCGGAC GGATTCAGGC TTGTGTGATG AGCAGTTCAT TGTGTTGGGG CACTCCATTA ACTGCGCATT TGGTGGTCGT AATGGGGACA CAGTATTACG ATGGGAGGGA AAATTCACAT TCTGATTATC CCGTCCCTGA TCTGCTTCAG ATGATGGGGC GTGCTAGCCG ACCACTTCTT GACAATGCCG GGAAGTGTGT GATCTTTTGT CACGCACCGC AGAAAGAGTA TTACAAGAAG TTTCTGTATG AAGCCTTCCC TGTGGAAAGT CAGCTCCAGC ATTTCTTGCA TGATAATTTC AACGCAGAAG TGGTTGCTGG GGTTATAGAG AACAAGCAAG ATGCCGTGGA TTATCTTACA TGGACTTTCA TGTACAGGAG GCTTCCCCAG AACCCTAACT ACTACAATCT CCAAGGTGTT AGCCACAGGC ATTTGTCTGA TCACCTATCA GAGCTGGTTG AGAACACCTT GTCTAATCTT GAAGCCAGTA AATGCATTGA GATAGAGGAT GAGATGGAAC TCTCTCCTCT CAACCTTGGT ATGATTGCAT CGTATTACTA CATCAGTTAT ACCACCATTG AGCGCTTCAG TTCACTGTTG TCTTCTAAAA CCAAGATGAA GGGACTTCTT GAGATCTTAA CATCAGCTTC GGAGTATGAC ATGATTCCTA TACGGCCTGG CGAGGAGGAT ACGGTTCGAA GATTAATCAA TCACCAGAGG TTCTCTTTTG AAAACCCAAA ATGCACAGAC CCTCATGTGA AGGCAAACGC GCTTCTTCAG GCGCATTTCT CAAGGCAAAA CATTGGCGGG AACTTGGCAA TGGATCAGCG TGATGTCCTT CTATCTGCAA CCAGACTTCT TCAAGCGATG GTCGATGTGA TATCAAGCAA TGGCTGGCTG AATCTTGCTC TGTTAGCTAT GGAAGTAAGC CAGATGGTGA CTCAAGGCAT GTGGGAGCGG GACTCCATGC TTCTGCAGCT CCCTCACTTC ACAAAGGACT TGGCCAAGAG GTGCCAAGAG AATCCCGGGA AAAACATTGA AACCGTATTC GATCTTGTGG AGATGGAGGA CGAAGAACGC CAAGAGCTTC TCAAGATGTC AGACGCTCAG CTTCTAGACA TTGCCAGATT CTGCAACCGC TTCCCAAACA TCGACCTTAC TTACGAGATT GTGGGCAGTG AAGAGGTGAA CCCAGGGAAA GAGGTTACAT TGCAAGTGAT GCTTGAGAGA GACATGGAGG GGAGGACAGA AGTGGGACCT GTGGATTCAC TCAGGTATCC CAAGACCAAA GAAGAAGGAT GGTGGCTGGT CGTGGGCGAC ACCAAGACGA ACCAGTTGCT GGCAATCAAG CGTGTCTCAT TGCAACGGAA AGCGAAGGTG AAGCTGGATT TCACAGTACC GAGTGAACCA GGAGAGAAGT CATACACACT ATACTTCATG TGTGACTCTT ATTTGGGGTG TGACCAAGAG TACTCTTTCT CTGTTGATGT CAAAGGATCT AGCGCTGGAG ATCACATGGA AGAATGATTT GTTGTTCAGC ATATGCTGAT TCTGGAGAGT GGGTAAACTT GTCTTCCGTT AGGGTCTCTG CAATCTCAAT TTTCTGAGAA TAGATATTAA GGTGTAATCG TTGTCCTGGT CTTTTACTAT TCCTTGACCT CTGGCAATAC TAAAACGAAA CCTTTTAGCC TATGTATGGG ATTGTTTCTG GTTTTGTTTG GACCAAAGTC AAGAGAGGAG CCAATGTCAA AACTACAATT TGAGTTTACG ACTTTGAAAG CTGAGATTGC TTAAAAGAAT TTTAAATGCA GCAGTGTTCA TTTTGT 
Length6966
Protein Sequence
Protein Residue
Map Locationscaffold_1: 8576063.. 8584542
Download Sequence
A.thaliana
AGI-codeAT1G20960.1
DescriptionU5 small nuclear ribonucleoprotein helicase, putative
TAIR curator summary
Alias[emb1507][embryo defective 1507]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg943470 cullin 1
3.60555 Ahg903021 auxin transport protein (BIG)
4 Ahg933239 Ring/U-Box superfamily protein
5.83095 Ahg477100 RING/FYVE/PHD zinc finger superfamily protein
6.16441 Ahg472581
7.54983 Ahg943823 HEAT repeat ;HECT-domain (ubiquitin-transferase)
7.74597 Ahg496629 splicing factor, putative
8.3666 Ahg482367 SecY protein transport family protein
10.3923 Ahg488863 staurosporin and temperature sensitive 3-like A
11.3137 Ahg477251 Pre-mRNA-processing-splicing factor
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression