Annotation |
Description | jgi|Araly1|472334|fgenesh2_kg.1__2288__AT1G20960.1 |
Sequence |
TTTAGGTCGA TTTTTAGGAG ATAGAGGACG TGAGAAGGGA GAAGAAATCT GAATCTCCCA TTAGGGTTTC TTCTAGTAGA TTGATTCGTT GCCGAGAGTG AAGCTAAGAA GAGATTTCGT TTCGTAGCTG TTTCGGTTTT CGGATTTGGT GATGGCGAAC TTGGGAGGCG GTGCGGAAGC ACATGCCAGG TTCAAGCAGT ATGAGTATAG AGCCAATTCT AGTCTGGTGT TAACTACTGA TAATCGTCCT CGCGATACTC ATGAGCCTAC AGGAGAACCG GAAACTCTGT GGGGGAAAAT TGATCCGAGG TCTTTTGGTG ACCGTGTTGC TAAGGGGAGG CCTCAGGAGT TGGAGGATAA GCTTAAAAAG TCTAAGAAGA AGGAACGTGA TGTTGTTGAT GATACTGCTA ATGTTAGGCA GAGTAAGAGG CGTCGTCTAA GGGAAGAGAG CGTTCTAACT GATACTGATG ATGCGGTTTA TCAGCCGAAG ACTAAGGAGA CTAGGGCTGC TTATGAGGCC ATGCTTAGTC TAATTCAGCA GCAGTTGGGT GGGCAACCTC TGAGTATTGT TAGTGGTGCT GCAGATGAGA TTTTGGCGGT TCTCAAGAAC GATACATTTA GAAACCCTGA GAAAAAGATG GAGATCGAGA AGTTGCTGAA CCATATTGAA AACCATGAGT TTGATCAGCT TGTTTCCATT GGAAAGCTGA TCACGGACTT TCAAGAGGGT GGTGATTCTG GTGGTGGTAA AGCTGATGAC GATGAAGGAC TTGATGATGA TTTGGGCGTG GCTGTTGAAT TTGAGGAGAA TGAAGAAGAC GATGATGAGA GTGATCCCGA TATGGTTCAA GAGGAAGATG ATGAGGAGGA TGAAGAGCCT ACCAGAACTG GAGGCATGCA GGTTGATGCT GGGATCAATG ATGAGGATGC AGGAGATGCA AATGAGGGCG CAAATCTTAA TGTTCAAGAC ATTGATGCAT ATTGGCTCCA GAGAAAGATC TCTCAAGCAT ATGAACAGCA GATTGATCCA CAACAATGCC AGGTACTTGC AGAAGAGCTG CTTAAGGTAC TCGCTGAAGG GGATGATAGG GTTGTTGAGA ACAAGCTGCT TATGCACCTT CAGTTCGAAA AGTTTAGCCT TGTTAAGTTT CTGCTGCGGA ATCGTCTTAA AGTTGTGTGG TGCACTCGTT TGGCTAGGGC AGAAGACCAG GAAGAGAGGA AGAGAATTGA GGAGGAGATG AGGGGGTTGG GCCCAGAGTT GACAGCTATT GTGGAGCAGT TGCATGCAAC AAGAGCAACA GCGAAAGAGA GGGAGGAGAA CCTGCAAAAA AGTATTAACG AAGAAGCCCG ACGTTTGAAG GACGAAACTG GTGGAGATGG AGGCAGAGGC AGGAGAGATG TTGCTGACAG AGATTCAGAG AGTGGCTGGG TGAAGGGTCA GCGTCAGATG CTGGACCTGG AGAGCTTGGC TTTTGACCAA GGTGGTCTCC TGATGGCGAA TAAGAAGTGT GACCTTCCCC CTGGCTCTTA CAGAAGTCAT GGCAAGGGAT ATGATGAAGT TCATGTGCCA TGGGTTTCTA AAAAGGTCGA TAGCAATGAG AAGCTTGTGA AGATTACGGA AATGCCTGAT TGGGCGCAAC CGGCTTTTAA GGGAATGCAA CAGTTAAACA GGGTTCAGAG CAAAGTGTAT GACACTGCAC TTTTTAAGGC AGAGAACATT CTTCTTTGTG CTCCAACTGG TGCTGGGAAA ACCAATGTTG CTATGCTCAC CATACTGCAG CAACTTGAAA TGAATAGGAA CAAAGATGGA ACTTATAACC ATGGAGATTA CAAAATTGTC TATGTTGCAC CCATGAAAGC CCTTGTTGCT GAAGTTGTAG GTAATTTGTC TAATCGTCTG AAGGATTATG GAGTTACTGT GAGAGAACTC AGTGGGGATC AGTCCTTAAC CGGGAGAGAA ATTGAAGAGA CTCAGATAAT TGTTACAACA CCAGAGAAAT GGGATATCAT CACTAGGAAG TCTGGAGACC GAACTTACAC TCAGCTTGTA AGACTTCTTA TAATTGATGA AATTCATCTC CTTCATGATA ATCGAGGGCC TGTGCTTGAA AGCATTGTCG CTAGGACTCT TAGGCAAATT GAAACCACGA AAGAGAATAT TCGTCTGGTT GGTTTATCTG CTACACTGCC AAATTATGAA GACGTAGCCT TGTTTTTGCG GGTTGATCTT AAGAAAGGTT TGTTTAAATT TGACCGCAGC TACAGACCCG TGCCTCTCCA TCAGCAGTAT ATTGGAATCA CTGTGAAAAA ACCGTTGCAG AGGTTCCAGT TGATGAATGA TCTATGCTAT CAGAAAGTTT TGGCAGGTGC TGGAAAGCAC CAGGTCCTTA TTTTTGTTCA TTCAAGGAAG GAAACAGCGA AAACTGCTAA AGCAATACGG GACACTGCAA TGGCAAACGA TACCCTCAGC AGATTCTTGA AGGAAGATAG TGTAACTCGT GAAGTTCTCC AGAGTCATGT TGACATTGTT AAAAATGGTG AGCTGAAAAA TATTCTGCCT TACGGTTTTG CAATTCATCA TGCTGGGTTA ACAAGGGGTG ATCGTGAGAT CGTTGAGAAT CTTTTTGCTC AGGGGCATGT GCAAGTCTTG GTTTCCACAG CAACTCTTGC ATGGGGTGTG AATCTGCCTG CACATACCGT TATTATAAAA GGAACCCAGG TGTATAATCC TGAAAAAGGG GCGTGGATGG AGCTGAGTCC TCTAGATGTT ATGCAGATGC TTGGTCGTGC TGGAAGACCT CAGTATGATC AACACGGGGA GGGTATAATT ATCACTGGCT ACAGCGAGCT GCAATATTAT CTTTCTTTGA TGAATGAGCA ACTACCTATT GAAAGCCAGT TTATTTCCAA ACTTGCTGAC CAGCTTAATG CTGAAATTGT GCTTGGAACC GTTCAGAATG CTAGAGAGGC TTGCCATTGG CTTGGTTATA CGTATTTATA TATCCGTATG GTTCGTAATC CAACGCTGTA TGGCTTAGCG CCTGATGCCC TTGCAAAAGA CGTAGTGTTG GAGGAGAGAA GAGCTGACCT GATACATTCG GCTGCTACTA TCTTGGACAA AAACAACTTG GTTAAGTATG ACAGGAAAAG TGGATACTTC CAAGTTACAG ATTTGGGACG CATTGCTAGC TACTATTACA TAACCCATGG GACCATAGCT ACATACAATG AGCATTTGAA GCCAACAATG GGTGATATAG ATCTTTATCG TCTGTTCTCC CTGAGTGAAG AGTTCAAGTA TGTGACGGTT CGGCAAGATG AGAAGATGGA ACTGGCGAAA CTTTTGGATC GTGTCCCGAT TCCGATCAAG GAAACTTTGG AGGAGCCCAG TGCAAAAATA AATGTATTGC TGCAGGCATA TATTTCACAG CTAAAGCTTG AGGGTCTTTC TTTGACATCT GACATGGTTT ACATTACTCA GAGTGCTGGA CGTCTTGTGC GAGCTCTTTA TGAAATTGTA TTGAAGCGGG GATGGGCTCA ACTGGCAGAG AAGGCTCTGA ACTTGTCTAA AATGGTTGGG AAGAGGATGT GGAGTGTCCA GACACCCCTG CGTCAGTTTC ATGGAATCCC CAATGATATT TTAATGAATT TGGAGAAGAA GGATTTGGTG TGGGAGAGGT ACTATGATCT ATCCTCACAG GAGCTAGGAG AGCTTATTCG TAGTCCTAAG ATGGGCAGGC CGCTTCACAA GTTCATTCAC CAGTTCCCAA AATTGACTCT TTCTGCACAT GTTCAGCCTA TTACTCGCAC TGTTCTGAAG GTGGAGCTCA CAGTTACACC TGATTTCCTG TGGGACGAGA AAATTCATAA ATATGTTGAG CCGTTTTGGA TAATTGTGGA AGACAATGAT GGTGAAAAGA TCCTTCATCA CGAGTATTTT CTTTTGAAGA AGCAGTATAT TGATGAGGAT CACACTTTGA ACTTCACTGT GCCAATCTTT GAACCGCTGC CACCTCAGTA TTTTGTTCGA GTGGTTTCAG ACAAGTGGCT TGGCTCGGAG ACTGTGTTGC CTGTATCTTT CAGGCATCTT ATTCTTCCAG AAAAGTATCC ACCTCCGACA GAGCTACTGG ACTTGCAGCC TCTCCCAGTG ACGGCGCTAA GGAATCCGAA TTATGAGATA CTCTATCAGG ATTTCAAGCA TTTCAATCCA GTGCAGACTC AGGTCTTTAC CGTTTTGTAT AACACTAACG ACAATGTGTT GGTTGCTGCT CCAACGGGAA GTGGGAAAAC TATTTGTGCG GAGTTCGCTA TTTTGAGGAA TCATCAAGAA GGACCTGATG CTACAATGCG TGTTGTTTAT ATTGCACCGC TTGAGGCTAT TGCCAAGGAG CAGTTTCGTA TCTGGGAGGG GAAGTTTGGG AAGGGTCTTG GTTTACGGGT TGTTGAGCTA ACTGGGGAGA CATCATTGGA TCTTAAGCTG CTTGAGAAAG GCCAGATAAT CATAAGTACT CCTGAGAAAT GGGATGCTCT TTCCCGCAGG TGGAAACAGA GAAAATACGT TCAACAAGTT AGTCTTTTCA TCGTCGACGA ACTCCATCTA ATTGGAGGTC AAGGTGGTCC AGTGTTGGAG GTAATCGTCT CCAGAATGAG ATATATTTCA AGTCAGGTCA ATAATAAGAT CAGGATTGTT GCGCTATCCA CTTCACTTGC AAATGCAAAA GATCTTGGGG AGTGGATTGG GGCCAGTTCC CACGGCCTTT TCAACTTCCC TCCTGGCGTC CGTCCTGTTC CACTGGAGAT CCACATTCAG GGAGTGGATA TATCCAGTTT TGAAGCCAGG ATGCAGGCGA TGACCAAGCC AACCTACACC GCCATAGTTC AGCACGCCAA GAACAAGAAG CCGGCTATTG TTTTCGTCCC AACCCGTAAA CATGTCCGCT TGACTGCTGT GGATCTGATG GCTTATTCTC ACATGGATAA CCCGCAGAGT CCTGATTTCT TGTTAGGGAA ACTGGAAGAA CTGGACCCTT TTGTTAGCCA AATCCGCGAG GAAACACTGA AGGAGACACT GCGTCATGGT ATTGGGTACT TGCATGAGGG TTTAAGCAGT CTGGATCAGG AGATTGTGAC ACAGCTCTTT GAAGCCGGAC GGATTCAGGC TTGTGTGATG AGCAGTTCAT TGTGTTGGGG CACTCCATTA ACTGCGCATT TGGTGGTCGT AATGGGGACA CAGTATTACG ATGGGAGGGA AAATTCACAT TCTGATTATC CCGTCCCTGA TCTGCTTCAG ATGATGGGGC GTGCTAGCCG ACCACTTCTT GACAATGCCG GGAAGTGTGT GATCTTTTGT CACGCACCGC AGAAAGAGTA TTACAAGAAG TTTCTGTATG AAGCCTTCCC TGTGGAAAGT CAGCTCCAGC ATTTCTTGCA TGATAATTTC AACGCAGAAG TGGTTGCTGG GGTTATAGAG AACAAGCAAG ATGCCGTGGA TTATCTTACA TGGACTTTCA TGTACAGGAG GCTTCCCCAG AACCCTAACT ACTACAATCT CCAAGGTGTT AGCCACAGGC ATTTGTCTGA TCACCTATCA GAGCTGGTTG AGAACACCTT GTCTAATCTT GAAGCCAGTA AATGCATTGA GATAGAGGAT GAGATGGAAC TCTCTCCTCT CAACCTTGGT ATGATTGCAT CGTATTACTA CATCAGTTAT ACCACCATTG AGCGCTTCAG TTCACTGTTG TCTTCTAAAA CCAAGATGAA GGGACTTCTT GAGATCTTAA CATCAGCTTC GGAGTATGAC ATGATTCCTA TACGGCCTGG CGAGGAGGAT ACGGTTCGAA GATTAATCAA TCACCAGAGG TTCTCTTTTG AAAACCCAAA ATGCACAGAC CCTCATGTGA AGGCAAACGC GCTTCTTCAG GCGCATTTCT CAAGGCAAAA CATTGGCGGG AACTTGGCAA TGGATCAGCG TGATGTCCTT CTATCTGCAA CCAGACTTCT TCAAGCGATG GTCGATGTGA TATCAAGCAA TGGCTGGCTG AATCTTGCTC TGTTAGCTAT GGAAGTAAGC CAGATGGTGA CTCAAGGCAT GTGGGAGCGG GACTCCATGC TTCTGCAGCT CCCTCACTTC ACAAAGGACT TGGCCAAGAG GTGCCAAGAG AATCCCGGGA AAAACATTGA AACCGTATTC GATCTTGTGG AGATGGAGGA CGAAGAACGC CAAGAGCTTC TCAAGATGTC AGACGCTCAG CTTCTAGACA TTGCCAGATT CTGCAACCGC TTCCCAAACA TCGACCTTAC TTACGAGATT GTGGGCAGTG AAGAGGTGAA CCCAGGGAAA GAGGTTACAT TGCAAGTGAT GCTTGAGAGA GACATGGAGG GGAGGACAGA AGTGGGACCT GTGGATTCAC TCAGGTATCC CAAGACCAAA GAAGAAGGAT GGTGGCTGGT CGTGGGCGAC ACCAAGACGA ACCAGTTGCT GGCAATCAAG CGTGTCTCAT TGCAACGGAA AGCGAAGGTG AAGCTGGATT TCACAGTACC GAGTGAACCA GGAGAGAAGT CATACACACT ATACTTCATG TGTGACTCTT ATTTGGGGTG TGACCAAGAG TACTCTTTCT CTGTTGATGT CAAAGGATCT AGCGCTGGAG ATCACATGGA AGAATGATTT GTTGTTCAGC ATATGCTGAT TCTGGAGAGT GGGTAAACTT GTCTTCCGTT AGGGTCTCTG CAATCTCAAT TTTCTGAGAA TAGATATTAA GGTGTAATCG TTGTCCTGGT CTTTTACTAT TCCTTGACCT CTGGCAATAC TAAAACGAAA CCTTTTAGCC TATGTATGGG ATTGTTTCTG GTTTTGTTTG GACCAAAGTC AAGAGAGGAG CCAATGTCAA AACTACAATT TGAGTTTACG ACTTTGAAAG CTGAGATTGC TTAAAAGAAT TTTAAATGCA GCAGTGTTCA TTTTGT |
Length | 6966 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_1: 8576063.. 8584542 |
Download Sequence |
|
A.thaliana |
AGI-code | AT1G20960.1 |
Description | U5 small nuclear ribonucleoprotein helicase, putative |
TAIR curator summary | |
Alias | [emb1507][embryo defective 1507] |
Gene coexpression |
MR |
MR | Locus | Description |
2.82843 |
Ahg943470 | cullin 1 |
3.60555 |
Ahg903021 | auxin transport protein (BIG) |
4 |
Ahg933239 | Ring/U-Box superfamily protein |
5.83095 |
Ahg477100 | RING/FYVE/PHD zinc finger superfamily protein |
6.16441 |
Ahg472581 | |
7.54983 |
Ahg943823 | HEAT repeat ;HECT-domain (ubiquitin-transferase) |
7.74597 |
Ahg496629 | splicing factor, putative |
8.3666 |
Ahg482367 | SecY protein transport family protein |
10.3923 |
Ahg488863 | staurosporin and temperature sensitive 3-like A |
11.3137 |
Ahg477251 | Pre-mRNA-processing-splicing factor |
|
RNA-seq |
Seasonal expression (July 2011 to June 2013) |
|
The four seasons |
|
Growth Chamber expression |
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