| Annotation |
|---|
| Description | jgi|Araly1|496711|fgenesh2_kg.8__2527__AT5G64920.1 |
| Sequence |
TCCTCTTAAA CGGCTTATCG GATCCGAATA CGGACCCGAG AGCCCGTTAA CCCGACGATA TATAGCACGA TGTCCGATGC TCCGTCGTCT TCTCCGGATG CCACGGCATC GCACTGGTGC TATCACTGCA ACAAACGCGT CGTCGTTGAA ACCTTAGATG ACTTGGTCGT GTGTTGCGAA TGTAACAAAG GTTTCGTCGA GTCAATTCAG CCGATTCCGG CCGCTTATTC ATCGCCGGCG CCACCGCAGC CGCTTTCCCC AGATCTGACT ATAGAAGACT CCAGTATTGG CTCGCATTTC CTCCAGATGC TCCGCTTGTT AGCCCACGCG CCTTCTCAGC GTTCACCACC ACGACACCTT GATGTGTTAT CTTACGAAGA TGATTTCTTC AGATTGGAGC TCAATAGTAG AAACGAAATC GACGAAGTTG AAGATGAAGA AGATGGAGAT GAAGAAGAAG AGGAGGATGA GGAAGAGAAT TTAACCGTCA ACGACGAAGA AGAGGAAGAA GATGATCTGA GGAGGAGAAA TCGATTTCCT CTCACGACGA CGCGGTCGAG AACGGGAAGA AACAGAATTC TCGATTGGGC TGAGATTTTG ATGGGAATCG AAGACAATTC GATTGAGTTC CGTATGGAAT CAGAACGGTA CACAGGAAAT CCGGCTGATT ACATCGACGA TGCAGCCGGA TACGAAGCTT TGCTACAGAA TTTAGCAGAA GGAGACGGTG GTGGTGGTGG AAGGAGAGGC GCACCACCGG CTGCAAAATC GGCCATAGAA GCGTTGGAGA CTTTTCAGGT TACTTCTTCG GAGGGAGAGA CGGTTATGGT GTGTGCTGTG TGTAAAGATG GAATGGTGAT GGGAGAAACC GGTAAAAAGT TACCGTGTGG ACATTGTTAC CACGGAGATT GTATTGTGCC ATGGTTAGGA ACAAGGAACT CTTGTCCTGT CTGTAGATTC CAGCTTCAGA CTGATGATGC TGAGTACGAG GAAGAGAGGA AGAAAAGAAC TTCTACCATG TCAGATTCTG CTACTGCTTC TTCTTCGGCT TCTCGTCACT AAATTTGTTG TTCCTTTGTT GTTACTCTTT CTCTTTAGAT TAAAACTTTG CTTAGTCTCT CAACACTGTT TGGTTGGTTG CATCAAGTAA GAAAACAGAG AACAAAAAAA AATCCGGCTC CAAAAGACTA TTGTTATTTG TAAGTGTGTT GTATCTTTGG CCTAAACAAT TCCATAGTGG TTTTCTTTTG ATTCTCAGTT GTTCATAATG TTTGCCGAAT CACAAAAAGG TTCCTGGGTT T |
| Length | 1301 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 20394924.. 20396255 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G64920.1 |
| Description | COP1-interacting protein 8 |
| TAIR curator summary | Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. |
| Alias | [CIP8][COP1-interacting protein 8] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3 |
Ahg471949 | Transcription initiation factor TFIID subunit A |
| 5.83095 |
Ahg481296 | DNA repair ATPase-related |
| 9.38083 |
Ahg934076 | tubulin beta-9 chain |
| 11.9583 |
Ahg482978 | ACT domain-containing protein |
| 12.2474 |
Ahg945390 | ATPase, V0 complex, subunit E |
| 15.2971 |
Ahg487300 | Single-stranded nucleic acid binding R3H protein |
| 15.7162 |
Ahg327329 | Disease resistance protein (TIR-NBS-LRR class) family |
| 16.1245 |
Ahg483163 | Single-stranded nucleic acid binding R3H protein |
| 16.2481 |
Ahg472250 | PAM domain (PCI/PINT associated module) protein |
| 16.4317 |
Ahg480735 | tubby like protein 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|