Detail



ID : Ahg898000

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|898000|Al_scaffold_0005_1966
Sequence
ATGGATTCTT ACCAGAACCA ATCCGGAGTG CCAAAGAAGG GGATGACGGA GAAAATCATG GAGAAGCTAC CAGGCCATCA TGGTGCTACT AGCACCGGCG GTGTACACCA CGAGAAGAAA GGTATGACGG AGAAAGTTAT GGAGCAGCTA CCAGGTAATC ATGGATATGG TAACACTGGC GGTGTTCACC ACGAGAAGAA AGGTATGACT GAGAAAGTTA TGGAGCAGCT ACCAGGTCAT CATGAAACTC ACCAGACTCA TGGAACCAAC ACGGGTTATG GTAACACTGG CGGTGTTCAC CACGAGAAGA AAGGTATGAC GGAGAAAGTT ATGGAGAAAC TACCAGGTCA TCAGGGGTCA CACCAAACGG GTACTAACAC GGGTTATGGT GCTACTAACA CTAATGTCGT TCACCATCAG AAAAAAGGTA TAGCTGAAAA AATTAAAGAG CAGTTGCCAG GTCATCAGGG AGCTCACCAA ACTGGAACCA CTGTAAATCA TGGTAATACT GGCGTTGTTC ACCACGAAAA GAAGAGTACG ATTGATAAGA TTAAAGAGAA GCTTCCCGGT GGTCATCACT AA 
Length582
Protein Sequence
Protein Residue
Map Locationscaffold_5: 14606370.. 14606977
Download Sequence
A.thaliana
AGI-codeAT3G50970.1
Descriptiondehydrin family protein
TAIR curator summaryBelongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.
Alias[LTI30][XERO2][LOW TEMPERATURE-INDUCED 30]
Gene coexpression
MR
MR Locus Description
9.53939 Ahg941255
13.6382 Ahg325294 Late Embryogenesis Abundant 4-5
14.2478 Ahg315868
16.8819 Ahg949566
18.1659 Ahg922994 related to AP2 1
24.8193 Ahg477570 alpha/beta-Hydrolases superfamily protein
31.0161 Ahg921008 cold-regulated 47
33.0454 Ahg492064 Protein of unknown function (DUF1223)
33.2265 Ahg334956
35.242 Ahg485210 cytochrome P450, family 94, subfamily B, polypeptide 3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression