| Annotation |
|---|
| Description | jgi|Araly1|898325|Al_scaffold_0005_2291 |
| Sequence |
ATGGCGTCTT TCAATTCATT CCCAATTCCC AAACAGATTG TTGGTTCTTC TTCTTCGTCG TCCTCGTCTA CTTCTCGGCC ACGTATCTTG GTGCGATCGA GTATAACATC GTCCATGAGC TCTACCAATA GTATGCTGGT CTTCGTACCT CCACATCCTT TGATTAAACA TTGGCTCTCG TTATTGAGAT GTGACCAAAC TTCTTTCCCT ATTTTCGTTA GAATTCCGGT GAGTTCCTTT GTTGCAACGA GGTGGTCGTT TCTATCCTCA GTCAAAGAGG AAAGCAGAAT ATATCAGAAA GATCCTCTTA AAGCATGCGC ATCTTCAGCT CCCTACACTG CAGAAAATGT ATTTTTAGAG CTCAAAGACC CAAAGGAAAA TATTGGTGTG GGTTCTGCAG AAAAATCATA CTCATCTCGT AGCATGTTGC AATACAATTT ACTAGCAAAG AACCTTTTGG CACTAGAGGA AACTTTTGTT GCCTTGGATT CTTTAAGAAT GGAAAGAGAT ATTATGTTGC AAATGGGGAA GCTGGGGGCT GCTGACTTAT TTAAAACCTG CCTATCTAGA TCTCGTGGTT CTTCAGTTGC GTCATGCTTA TCTGACACAA CCGAGTTGGT GGGTACTACA CCGAAACAGC AAGTCTTTGT ATCCTCGAGA AGAAAATTGA AAGAGAAATC AAGAAGGTCG AGTGTGACAG CTGAGAATGG TGATCAGGGT TCTTTGCCAA TCGGTTTGAG AACCACATGG AATAATATTG ATGTCCCTAG AGGGAGAAGA CCACCAAAAT ATAGAAAGAA AAGAGAGAGG ATCTCTAGAA ACGAGGCTGA GATGTCAACA GGAGTCAAGA TAGTGGCGGA CATGGAGAGA ATCAGAACAC AACTGGAGGA AGAAAGTGGT AAGGTAGCGA GTTTGAGTTG TTGGGCTGAA GCAGCTGGGA TGAACGAAAA ACTCCTGATG CGCAATCTAC ATTATGGTTG GTACTGTAGA GATGAACTGT TAAAAAGCAC CCGGTCTTTG GTTCTCTTCC TTGCAAGAAA TTACCGTGGA CTGGGAATCG CCCACGAAGA TTTAATTCAG GCAGGGTATG TGGGGGTGTT ACAAGGAGCA GAGAGGTTTG ATCACACTAG GGGTTACAAG TTTTCAACAT ATGTGCAGTA TTGGATAAGA AAATCAATGT CCATGATGGT GTCACGGCAT GCAAGAGGCG TCCATATTCC TTCATCAATA ATTCGAACTA TCAATCAGAT ACAAAAGGCT CGTAAGACCT TGAAAACGAG CCACGGGATA AAATATCCGG CGGATGAGGA GATTTCGAAA CTAACAAGCC TCTCTGTGAA AAAGATTCGA GCAGCTAACC AATGCCTAAA AGTGGTCGGT TCAATCGAAA AGAAAGTCGG GGATTGCTTT TCTACAAAAT TCCTGGAATT TACACCGGAC ACGACGATGG AGAGTCCTGA GGAGGCCGTG ATGAGGCAGA GCGCGAGGAG AGACATACAT GATATTTTAG AAGGGCTAGA GCCAAGAGAG AAGCAAGTGA TGGTTCTACG TTATGGTCTT CAAAACTACA GGCCCAAGTC CCTGGAAGAG ATTGGGAAGC TTCTTAGGGT TAGCAAAGAA TGGATTCGGA AGATCGAACG GAGAGCGATG GCGAAACTCA GGGACCAACC CAACGCCGAA GACCTCAGAT ATTATTTGAA TCAGTAA |
| Length | 1707 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 15851273.. 15854139 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G53920.1 |
| Description | RNApolymerase sigma-subunit C |
| TAIR curator summary | Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. |
| Alias | [SIG3][SIGC][SIGMA FACTOR 3][RNApolymerase sigma-subunit C] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.87298 |
Ahg490893 | heavy metal atpase 1 |
| 9.8995 |
Ahg490036 | cytochrome P450, family 706, subfamily A, polypeptide 6 |
| 11.9583 |
Ahg474479 | mitogen-activated protein kinase 18 |
| 12.3288 |
Ahg470445 | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family |
| 13.4907 |
Ahg355042 | pleckstrin homology (PH) domain-containing protein |
| 24.3721 |
Ahg494619 | chlorophyllase 2 |
| 27.1109 |
Ahg496008 | Quinone reductase family protein |
| 29.0861 |
Ahg934057 | |
| 34.8568 |
Ahg483032 | |
| 37.4166 |
Ahg913068 | RING/U-box superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|