| Annotation |
|---|
| Description | jgi|Araly1|905293|Al_scaffold_0003_2421 |
| Sequence |
ATGGATCCTT TATCAGTGCT GAAAGATTTC ACAATCCGAG GAGACGTTGA TAAAATAGAG CGAGTCGGAG CCAATTACAG ATTCGGATCG GAATATTCGT TCCCATGCGC GACGGAGACG GCATACCGAT CAAAAGGTGG AACTCTCTAC ACACTCGAAG CATTAGTTCA CTATGTGAAG AATCAACATC TGAAGCACGG AGAGTATATG CAATCAACCG TCAAAAGCTC CGTCCCGGCG GTTACTTTAC CAGATCGGAA ACCTCTCCTC GATTACCTCA CCGGAAGAGT CGCTTCTTCC GATTCAATTG ATTACCTTTT GCTTCAGCAG CAAAACGCAC AGAGTCAGAA GCAGAACGAA GAGTATCGAC CAGATCAAGA TAATTCAGCG TTTGTGTCTC GTGAAAACGC GATTGAGGAT ATGGAGGTTG AAGATTTCGG TAAATCCGGC GAAGATGTTG ATTACATTAT GCTGATACGA TCCAATGAAC GGCCGTTGAA GAGCCGTGAC GCGATTCTTC AGTGTAAGAA CAGAGATTTT TATAGTGTGT TGGTGAATTC GACTAAAAGA GAAGAAGAGA GACAGAGGAT TGAGTCTCAT CAGAGGAAAG ATGGATTAGT TGCTAAGAGT AGGTTAATGG GAGCTGAAGA GAGAGGTATT GTAGGGTTTA GTGGTGGTGG TGATGATAAT GGTTATGATG CTAATCCTAA ATCTAAGCTT CATTTTAAAG CTGGGAAGAT TGGAGAAGGC GTACCGATAA TTCTTGTGCC GAGTGCGTCT CAGACGTTGA TTACTATATA TAATGTTAAA GAGTTTCTTG AAGATGGTGT TTATATACCG AATGATGTTA AGGCGAAGGA GATGAAGGGG TTGAAGCCGG ATTGTATTAC GGTTCAGAAG AAGTTTAGTA GAGATAGGGA GAGAGTTGTG ACTGCTTATG AAGTTAGGGA TAAGCCTTCT GCTTTGAAGC CTGATGATTG GGATCGTGTT GTTGCGGTTT TTGTATTGGG GAAGGATTGG CAGTTCAAGG ATTGGCCTTT TAAGGATCAC GTTGAAATAT TCAATAAGAT CATTGGGTTC TTCTTGCGGT TTGAAGATGA CAGTATCGAA TCAGCCAAGA CGGTGAAGCA ATGGAATGTA AAGATCATCT CGATTAGCAA GAATAAGCGG CATCAAGACC GGGCTGCTGC ATTAGAAGTC TGGGAAAAAC TCGAGGAGTT TGTGCGATCT CGGTCGCATT CTTAG |
| Length | 1245 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 9506889.. 9508420 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G22590.1 |
| Description | PLANT HOMOLOGOUS TO PARAFIBROMIN |
| TAIR curator summary | Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC). |
| Alias | [CDC73][PHP][PLANT HOMOLOGOUS TO PARAFIBROMIN] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.4641 |
Ahg488811 | kinase associated protein phosphatase |
| 3.74166 |
Ahg484402 | eukaryotic translation initiation factor 4B1 |
| 9.38083 |
Ahg480104 | ankyrin repeat family protein |
| 22.7156 |
Ahg946493 | DWNN domain, a CCHC-type zinc finger |
| 28.9137 |
Ahg486142 | embryo sac development arrest 7 |
| 28.9828 |
Ahg893964 | dicer-like 4 |
| 34.6987 |
Ahg488788 | alpha/beta-Hydrolases superfamily protein |
| 36.647 |
Ahg933591 | helicase in vascular tissue and tapetum |
| 37.081 |
Ahg936653 | Protein of unknown function (DUF185) |
| 38.3406 |
Ahg903199 | HSP20-like chaperones superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
|
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| Growth Chamber expression |
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