| Annotation |
|---|
| Description | jgi|Araly1|893964|Al_scaffold_0006_1960 |
| Sequence |
ATGCGTGAAG AAGTTGACTT GAGCTTGACC ATACCCTCGA AGATTTTGGG AAAGCGAGAC AGAGAAAAAA AAGGTAAAGA AGAAACAAAC AAAAACAAAA AAGAGAGAGC TAAAATGCAG CAAAAGGACC CAATTCTTCT CACTAGTGCC ACTCACAAGT TTCTTCCTGC TTTGACCATG CCGTACGGTG AAATCGAAAT CGGCGACGAT TTTCGCTCTC TCGACTGTGA CGCCGATGTT TCCTCCGACA TTCACCTCTC TTCTTCTTCC TCTTTTTATT CGTTTTCTTC TTCTTCGTCT TCTTTGTGTA CCGATGATCC TTCACCGAAA ATGGAGAAAG ACCCTAGAAA AATCGCCAGG AGGTATCAGG TGGATCTGTG TAAGAAAGCA ATGGAGGAGA ACATTATTGT ATATTTGGGT ACAGGTTGTG GGAAGACTCA CATTGCAGTG ATGGTTATAT ATGAGCTCGG TCATTTGGTT CTTAGTCCCA AGAAAAGTGT TTGTATTTTT CTTGCTCCCA CCGTGGCTTT GGTTGAACAG CAAGCTAAGG TCATAGCGGA CTCTGTCAAC TTCAAAGTTG CAGTACATTG TGGAGGCAAG AGGATTGTGA AGAGCCACTC TGAGTGGGAG AGAGAGATTT CAGAGAATGA GGTTCTTGTT ATGACTCCAC AAATACTTCT GCACAACTTA CAGCACTGTT TCATCAGGAT GGAGTGTATC TCCCTTCTAA TATTTGATGA GTGTCACCAT GCTCAACAAC AAAGCAACCA TCCTTATGCG GAAATCATGA AGGTTTTCTA TAAATCAGAA AGTTTACAAC GGCCTCGAAT ATTTGGAATG ACTGCATCTC CAGTTGTTGG CAAAGGATCT TTTCAATCAG AGAATTTATC GAAAAGCATA AATAGCCTTG AAAATTTGCT CAATGCCAAG GTTTATTCAG TGGAAAGCAA TGTCCAGCTG GATGGTTTTG TTTCATCTCC TTTAGTCAAA GTATATTATT ATCAGTCAGC TATAAGTGAT GCATCTCAAT CAACCATCAG ATATGAAAAC ATGCTGGAGG ACATCAAACA GCGGTGCTTG ACATCAATTA AGCTGCAGAT TGATACCCAT CAAACACAAA CCCTCCTAAA TATGAAAAGG CTTCTCAAAA AAACTCATGA TAATCTCATA TATTCTCTGG TGAATCTTGG CCTCTGGGGA GCAATACAGG CTGCTAAAAT TCAATTGAAT AGTGATGTAC AAGAAGAGCC TGTGGGCGAG AATCCTAAGT CAAAGATATG TGATACATAT CTTTCTCTGG CTGCTGAGGT CCTCTCTTCT GGTGTTGCTA AAGATGAGAA TGCATCTGAA CTCCTCAGCT TAGCAGCGTT GAAGGAACCA TTATTCTCTA GAAAGCTAGT TCAATTGATT AAGATCCTTT CGGCATTCAG GCTAGAGCCA CACATGAAGT GTATAATATT TGTCAATCGG ATTGTGACTG CAAGAACATT GTCATGCATA CTAAATAACT TGGAACTGCT ACGGTCTTGG AAGTCTGATT TCCTTGTTGG ACTTAGTTCT GGACTGAAGA GCATGTCAAG GAGGGGTATG GAAACAATAC TTAAACGGTT CCAATCTAAA GAGCTCAATT TACTGGTTGC CACTAAAGTT GGTGAAGAAG GCCTTGATAT TCAGACATGC TGTCTTGTGA TCCGTTATGA TTTACCAGAG ACTGTTACCA GCTTCATACA GTCCAGAGGT CGTGCTCGAA TGCCTCAGTC TGAATATGCG TTTCTAGTGG ACAGCGGAAA CGAGAAAGAG ATGGATCTTA TTGAAAATTT TAGAGTAAAT GAAGATCGAA TGAATCGGGA AATTACTTCC AGAACGTCAG AGGAAACTTG TCCTATACTT GATGAGGAGT TATACAAAGT TCATGAGACA GGAGCTTGTA TCAGTGGTGG AAGTAGCATC TCCCTTCTCT ATAAATATTG TTCTAGGCTT CCACATGATG AATTTTTTCA GCCCAAGCCA GAGTTTCAAT TCAAGCCTGT TAATGAATTT GGTGGAACTA TCTGTCGCAT AACTTTACCT GCTAATGCTC CTATAAGTGA AATCGTCAGT TCACTACTAC CTTCAACTGA AGCTGCTAAA AAGGATGCTT GTCTAAAGGC TGTGTATGAG TTGCACAACT TGGGTGTACT TAACGATTTT CTGTTACCAG ATTCAAAGGA TGAAATTGAG GACGAGTTGT CAGATGATGA ATTTGATTTT GATAACATCA AAGGTGAAGG TTGTTCACGA GGTGAACTGT ATGAGATGGT TGTTCCTGTC TTATTTAAAC AAAAGTGGGA TTCATCAAGA AGTTGTGTCA GTCTTCATTC TTACTACATA AGGTTTGTGC CTCATCCCGC AGATAGGAGC TACAAAAAGT TTGGTTTCTT CATGAAGTCA CCTCTTCCCG TTGAGGCTGA GACTATGGAT TTCGATCTTC ACCTTGCTCA TCAAAGATCT GTAAGTGTAA AGATTTTTCC ATCAGGAGTC ACAGAATTCG ACAACGATGA GATAAGGCTA GCGGAGCTTT TCCAGGAGGT TGCCCTGAAG GTTCTTTTTG AACGGGGGGA GCTGATCCCG GAATTTGTGC CCTTAGAACT GCAAGACTCT TCTAGAACAA GCAAATCTAC CTTCTACCTT CTTCTTCCAA TCAGTCTGCA TGATGCAGAA AGTGTTATAT CTGTAGATTG GGTGACTATC AGAAGCTGCT TGTCATCACC AATCTTTAAG ACTCCATCTG TTTTAGTGGA AGATATAGTT CCTCCTACGG GATCTTATTT AAATCTAGCA AATGGCTGCT GGAAAATTGA TGATGTGAAG AACAGCTTGG TTTTTATGAC CCACAATAAA CAGTTTTACT TTGTAGCTGA TATCTGCTAC GGAAGAAATG GGTTCAGTCC TGTTAAGGAA TCTAGCACCA AAAGCCATAT GGAGAACATA TATAAGTTGT ATGGCGTGGA ACTCAAGCGT CCTGGACAGC CACTCTTGCG TGTGAAACCA CTTTGTCATG TTCGGAACTT GCTTCACAAC AGAATGCAGA AGAATTTGGA ACCACAAGAA CTTGATGAAT ACTTCATAGA GATTCCTCCC GAGCTTTCTC AGTTAAAGAT AAAAGGATTA TCTAAAGACA TCGGAAGCTC GTTATCCTTG CTACCATCAA TCATGCATCG TGTGGAGAAT TTACTCGTGG CTATTGAACT GAAACATGTG ATGTCTGCTT CGATCCCTGA GATAGCTGAA GTTTCTGGTC ACAGAGTACT CGAGGCGCTC ACAACAGAGA AATGTCATGA GCGCCTTTCT CTTGAAAGGC TTGAGGTGCT TGGTGATGCA TTCCTCAAGT TTGCTGTTAG CAGACACCTT TTTCTACACC ATGATAGGCT TGATGAAGGA GAGCTGACTC GGAGACGCTC TAACGCCGTT AACAATTCCA ACTTGTGTAG GCTTGCAATA AAAAGAAATT TGCAGGTCTA CATCCGTGAT CAAGCATTAG ATCCTACTCA GTTCTTTGCA TTTGGCCATC CATGCAGAGT AACCTGTGAC GAGGTAACGA GTAAAGAGGT TCATTCCTTG AATAGGGTTC CTGGGCTCTT GGAGTCAAAT AGTGAAATCA GATGTAGCAA AGGCCATCAT TGGTTGTACA AGAAAACAAT TGCTGATGTG GTTGAGGCTC TTGTGGGAGC TTTCTTAGTT GACAGTGGCT TCAAAGGTGC TGTGAAATTT CTTAGCTGGA TTGGTGTAAA TGTTGATTTT GAATCCTTGC AAGTACAAGA TGCTTGTATT GCAAGCAGGC GCTACATACC CCTCACTACT CGCAATAATT TGGAGGCCCT TGAAAACCAG CTTGACTATA ACTTCCTCCA CAAAGGTCTA CTTGTACAAG CCTTTATCCA TCCATCTTAC AACAGGCATG GAGGAGGCTG CTACCAGAGA TTGGAGTTTC TTGGGGATGC TGTTCTGGAC TACTTGATGA CATCCTATTT TTTCACTGTC TTCCCGAAAC TGAAACCTGG TCAACTGACC GATCTAAGAT CGCTCTCAGT AAATAATAAG GCGCTAGCAA ATGTTGCTGT CAGTTTTTCG CTAAAGAGAT TTCTATTTTG CGAGTCCGTA TATCTCCATG AAGCTATAGA GGATTATACC AATTTCCGGG CAGCGTCCCC ATTGGCAAGT GGACCATCTG AAGGTCCAAG ATGCCCAAAG GTTCTTGGTG ACTTGGTAGA ATCCTGTTTG GGGGCTCTTT TCCTCGATTG TGGATTCAAC TTGAATCATG TCTGGACTAT GATGCTATCA TTTCTAGATC CGGTCAAAAA CTTGGCTAAC CTGCAGATTA GTCCTATAAA GGAACTGATT GAACTTTGCC AGTCTTACAA GTGGGATCGG GAAATATCAG CGACGAAAAA GGATGGTGGT TTTTCTGTTG AATTAAAAGT GACCAAGAAA GGTTGTTGCC TTACAGTTTC TGCAACTGGT CGGAACAAAA GAGAGAGCAC AAAAAAGGCC GCACAGCTGA TGATTACATC CCTGAAGGCT CATGAGCAAA TAACAACCTC TCATCCGTTG GAGGATGTTC TGAAGAATAG CAACCTTAAT GAAGCTAAAT TAATTGGCTA CAATGAAGAT CCTATAGATG TTGTGAATCT TGTTGGGCTG GACGTTGAAA ACCTAAAAAT CCAAGAAAAT CTTGGCGAGA ATAGTGAAAT AAGCAGCTCA TACGTCATCA GACGAGGTCT CCCCCAGGCA CCATCTAAAA CAGAAGACAG GCTTCCTCAA AAGACCATCA TAGAAGCAGG TCAACCAAGC AGCAAAACCG CAAAATCCCT CTTGCACGAA ACATGTGTTG CTAACTGTTG GAAGCCTCCA CACTTCGAAT GTTGTGAGGA GGAAGGACCA GGCCACCTGA AATCATTCGT CTATAAGGTA ATCCTGGAAG TTGAAGATGC GCCCAATATG ACATTGGAGT GTTATGGTGA GGCTAGAGCA ACGAAGAAAG GTGCAGCAGA GCACGCTGCC CAAGCTGCTA TATGGTGCCT CAAGCATTCT GGATTCCTTT GA |
| Length | 5082 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 8172944.. 8182470 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G20320.1 |
| Description | dicer-like 4 |
| TAIR curator summary | Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. |
| Alias | [ATDCL4][DCL4][DICER-LIKE 4][dicer-like 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg483691 | WD-40 repeat family protein / beige-related |
| 12.9615 |
Ahg493416 | 20S proteasome beta subunit D1 |
| 15.906 |
Ahg475066 | |
| 16.7033 |
Ahg900511 | |
| 17.1464 |
Ahg471265 | Pentatricopeptide repeat (PPR) superfamily protein |
| 17.3205 |
Ahg494623 | Aluminium induced protein with YGL and LRDR motifs |
| 17.6635 |
Ahg490278 | GTP-binding family protein |
| 19.1833 |
Ahg476130 | SIN3-like 4 |
| 19.8997 |
Ahg919008 | histidine-containing phosphotransfer factor 5 |
| 21.8174 |
Ahg487302 | DNA/RNA helicase protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|