| Annotation |
|---|
| Description | jgi|Araly1|933591|scaffold_401579.1 |
| Sequence |
AGAGAGAGAG CAAACCCTAA TAGCGATGGG GAACAAGAGA TTCAGGTCTG ATAATGCAGC AGGGAAACCA ACTTCCGTCG AAGCTACTAG GATTTGGGCC ACTAAGGTCA TCGAAGACTT TCGAGCCTCC GGGAACGAAG TTTACACGTT TGAGCATAAT CTATCAAATA GCGAACGTGG AGTCATTCAT CAGATGTGCC GGAAAATGGG TATTCAATCG AAAAGTTCTG GGCGTGGGGA ACAAAGGCGT CTTTCAATAT TCAAAAGTAG GCATAAGAAT GGAAAGAACA ATGAAGCCAA TGAGAAATCA AATAAAGAGA AGCTTAAATG TGTGTCATTT CCGCCGGGAT CAGATGCTAT TCTGCAGGAG TTATTTACTC ACTACCCACC TTGTGACGGA GATACCGCTG CAACATCGTT TAACAAGTAC TCTGGTAACA AGGGTAAACA AGGACAATGG AAAGATGATT TTTTCCGGAA ACCACAGATT AGCAATGAGG AGATTCTTGA AAAAGTGGCA TCTTTGAGTT CTAGACTTAA AAAGGATAAA GCTCTTAAGG AGATCTCTAA GCTGCGGTCG AAGCTTCCCA TCACATCCTA TAAAGACGCA ATCACATCTG CAGTGGAATC CAATCAGGTT ATTCTCATTT CTGGTGAAAC TGGTTGCGGG AAAACTACTC AGGTGCCTCA ATATCTTTTA GACCATATGT GGTCAAGCAA AAGAGAAACT TGCAAAATTG TTTGCACCCA ACCTCGTCGG ATATCCGCCA TGTCAGTTTC TGAAAGAATA TCTTGTGAAA GAGGTGAAAG CATTGGAGAA AACATTGGTT ACAAGGTTCG ACTCCAAAGC AAAGGTGGAA GGCACTCATC AGTTGTTTTC TGCACGAATG GCATTCTCCT GAGGGTGCTT GTAGGAAAAG GCTCTGTTAG CAGTGTTTCC GACATAACTC ACATCATTGT GGATGAAATC CATGAAAGAG ATTGCTATTC TGATTTCATG TTGGCAATAA TAAGGGATTT ACTTCCATCA AATCCTCATC TCCGTTTGAT TCTCATGAGT GCTACACTTG ATGCTGAGAG ATTTTCGGGA TATTTTGGAG GTTGCCCGGT TGTCCGTGTC CCTGGATTCA CTTATCCAGT GAGAACCTTA TATTTGGAGG ATGTGCTCTC TATTCTGAAA TCAGGTGGAG ATAATCATCT AAGCTCTGCC AACTTGAGTA TACCAGACCA CAAGCTTGAT TTGACGGATG AAGATAAACT TGCTTTAGAT GAAGCAATCA TCTTGGCTTG GACAAATGAC GAGTTTGATA CCCTCTTAGA TCTAGTTTCT TCTAGAGGAA GTCATGAGAT CTACAATTAT CAGCACCAAT CAACCTGGCT AACACCACTA ATGGTCTTTG CTGGAAAGGG CAGGATCAGT GATGTCTGCA TGCTCCTATC ATTTGGTGCG GACTGGAACT TAAAGTCTAA AGATGGTATG ACTGCATTAG AATTGGCTGA AACAGAGAAT CAACTAGAAG CTGCTCAAAT AATCAGGGAG CATGCAGACA ATTTCCAGTC TAATTCTCAG CAAGGACAAC AGTTACTTGA TAAATACATG GCGACAATCA ACCCAGAGCA GGTCGATGTG AGTCTTATAC AGCAGTTAAT GAGGAAAATA TGTGGCGATT CAGAAGATGG TGCCATTCTT GTTTTTCTAC CTGGATGGGA TGATATAAAT AAAACAAGAC AGAGATTACT TGATAACCCT TTCTTCGCAG ATAGTGCTAA ATTCGACATT ATATGTCTTC ACTCAATGGT TCCAGCAGGG GAACAGAAGA AAGTTTTTAA TCGCCCCCCT CGAGGTTGTC GTAAAATCGT GCTTGCGACA AATATTGCTG AATCAGCAGT TACCATTGAT GATGTGGTTT ATGTGATAGA TAGTGGCCGG ATGAAGGAAA AGAGCTATGA TCCTTATAAT AATGTTTCAA CTCTCCAATC TTCTTGGGTA TCAAAAGCAA ATGCAAAACA GCGTGAGGGT CGAGCAGGCC GCTGCCAACC TGGCATTTGT TATCATCTCT ATTCTAGACT TCGGGCAGCC TCTATGCCAG ATTTTAAAGT TCCTGAAATC AAGAGGATGC CGGTAGAAGA ACTCTGCTTA CAGGTTAAGA TACTTGATCC AAATTGTAAA ACAAATGATT TCCTTCAGAA ATTGTTGGAC CCGCCTGTTG ATCAAAGTAT TGCAAACGCC TTAAGCATAC TACAGGATAT CGGGGCCCTG ACACCTCAGG AAGAGCTGAC AGAACTTGGA GAGAAATTTG GTCATCTCCC AGTTCATCCT CTGATTAGCA AAATGCTTTT CTTCGCTGTA TTAGTAAACT GTCTGGATCC AGCACTTACT CTGGCATGTG CAGCGGACTA CAAGGAACCA TTTACTATGC CTATGTCGCC AGGTGAAAGA CAGAAAGCTG CTGCTGCAAA ACTTGAACTT GCATCACTTT GTGGAGGTGA CAGTGATCAC CTTGCAGTTG TTGCTGCCTT TGAGTGCTGG AAAAACGCAA AAGAAAGAGG TCTTTCGGCA GAGTTTTGCT CTCAGTACTT TGTCTCTCCA AGTGCTATGA AGATGTTGGA TCAAATGCGT AGCCAACTTG AGTCGGAACT TAAAAGACAT GGGATTATTC CTAACGACAT TTCTAGTTGT AGCCAAAATT CGCGTGATCC TGGTATACTC CGTGCTGTGC TAGCAGTAGG ATTGTATCCT ATGGTGGGAA GATTGTGCCC AGCTTTTGGT AATAATCGAA GAACTATAGT AGAAACTGCT AGTGGTGCCA AAGTCCGTGT GCATTCGCTG TCAAACAACT TCAACTTGTC GTCTAAAAAG TATGATAAAT CTTTAGTTGT TTTCGATGAG ATCACTCGTG GAGATGGAGG CATGCACATA AGAAACTGTA CTGTTGCTCG TGATCTTCCT TTGTTACTTG TCTCAACAGA GATAGCTGTG GCTCCTACAG GGAGCAGTGA TTCTGATGAT AGTGATGAAG AAGAAGAAGA TGAAGAAGAA GTAGGAGCTA ATACTAATGA AGACAGAATG GACATACATA AAGAAGAGAG TAGGCGTGGA GCGAAAATGA TGTCTTCACC TGAAAATTCA GTCAAATTGG TAGTTGATCG CTGGCTGCCT TTCAGAACCA CAGCCCTTGA AGTTGCTCAA ATGTACATTT TGCGGGAAAG ACTAATGGCG TCTATTTTAT TCAAGGTAAC ACATCCACGG GAACATTTGC CGCCTCATCT CGGAGCTTCT ATGCATGCAA TAGCTGGTAT TCTCTCATAT GATGGTCAAG CAGGACTTTC ATATACACCG GAGTCTATGG GACCAAAACA TTCAAGGAAT GAGATGTATG ATACTGGTGG ATGGGAAGAG AAACCAAACT CTTTCCTCAA CTCTCTCTTT TGGTCTCTGA GTTTGAAAGA GAACAAGCAT CCAAGTCACA TGAATAGGAA TCGGCAGCAT GGTTTCAACA TGGCTCCAAC AGAAGCTGCA TCGATACCGA GGCAGCAAAA CATTAAGCAA AGAAATCCCA AATCAGCCAA CAATACTGAT TCGGGTAAGA AAAAAGAGAA GATGTTTGAT AATCCCACCA ATGGGATCAA TCAGCCTGAA GCTGCTTCTA CGGGTAAGCC ATCAAAGTAC AAATCAAGCA ACAGTTCGGG TGCAAGTAAC AAGAAAGAGA ACATGCCTTC TGATCAGGCC CACGGGAATA AGCAACATAA CACAGTTCCA AAAGAAGCTG CTGCACCAAT GGCGAAGAAT CAAAGCAGTA AGAAAAAGAA GACCAGGTCA GGCAACAACT CGGATTCGGG TAAGAAGAAA GACATGTATG TTCCAAAGAT AGATATCCAC AAAAGGCAAC GCGAAGACAA AGCAGAACAG AAGGGAGATG CATGAAGACC AATTGTTTTT GGGTC |
| Length | 3945 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 13715267.. 13721417 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G30800.1 |
| Description | helicase in vascular tissue and tapetum |
| TAIR curator summary | Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family. |
| Alias | [ATVT-1][HVT1][helicase in vascular tissue and tapetum] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.7473 |
Ahg470078 | SEC7-like guanine nucleotide exchange family protein |
| 14.8997 |
Ahg494573 | CAP-binding protein 20 |
| 18.5742 |
Ahg495966 | TBP-associated factor 15B |
| 19.0263 |
Ahg480602 | ubiquitin family protein |
| 19.975 |
Ahg922300 | Defender against death (DAD family) protein |
| 20.7364 |
Ahg474346 | protein kinase family protein / C-type lectin domain-containing protein |
| 21.2132 |
Ahg478624 | |
| 23.4094 |
Ahg486216 | nuclear RNA polymerase A1 |
| 26.3249 |
Ahg896503 | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
| 27.55 |
Ahg474980 | Protein kinase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|