| Annotation |
|---|
| Description | jgi|Araly1|919374|scaffold_100655.1 |
| Sequence |
TAGCAGAGTT GGTGAAATCA ATGGGCCACG AGAACGCCGC CGTTTCGGAT ATTCAACATC ATGATGACGG CGCTGCGTCG TCGCCGGGAT TCAAGCTGGT CGGATTCTCC AAGTTCGTTA GGAAGAATCC AAAGTCTGAT AAATTCAAGG TTAAGCGTTT CCACCACATC GAGTTCTGGT GCGGCGACGC CACCAACGTC GCTCGTCGCT TCTCCTGGGG TCTCGGGATG AGGTTCTCCG CCAAATCCGA TCTCTCCACC GGAAACATGG TTCACGCCTC TTACCTACTC ACCTCCGGCG ACCTCCGATT CCTTTTCACT GCTCCTTACT CTCCGTCTCT CTCCGCCGGA GAAATTAAAC CGACAATGAC AGCTTCTATC CCAAGTTTCG ATCACGTCTC TTGCCGCTCC TTCTTCTCTT CACATGGTCT CGGCGTAAGA GCCGTTGCGA TTGAAGTAGA AGACGCAGAG TCAGCTTTCT CCATCAGTGT CGCTAATGGT GCTATTCCTT CGTCGCCTCC TATCGTCCTC GACGAAGCAG TTACTATCGC TGAGGTTAAA CTATACGGCG ATGTTGTTCT CCGATATGTT AGTTACAAAG GCGGAAACAC CGGTAAATCG GAATTCTTGC CAGGATTTGA GCCTGTGGAG GATACGTCGT CGTTTCCATT GGATTACGGT ATACGTCGGC TTGACCACGC CGTGGGAAAC GTTCCTGAGC TTGGTCCGGC TTTGACTTAT GTCGCGGGGT TCACTGGTTT TCACCAATTC GCAGAGTTCA CAGCAGACGA CGTTGGAACC GCCGAGAGCG GTTTAAATTC AGCGGTCCTG GCTAACAATG ATGAGATGGT TCTTCTGCCG ATTAACGAGC CAGTGCACGG GACGAAAAGG AAGAGTCAGA TTCAGACGTA TTTGGAACAC AACGAAGGCG CAGGGCTACA ACATCTTGCT CTGATGAGTG AAGACATATT CAGGACTCTG AGAGAGATGA GGAAGAGGAG CAGTGTTGGA GGATTCGACT TCATGCCTTC TCCTCCGCCT ACTTACTACC AGAATCTGAA GAAACGGGTC GGCGACGTGC TGAGCGATGA ACAGATCAAG GAGTGTGAGG AATTAGGGAT TCTTGTGGAC AGAGATGATC AAGGGACGTT GCTTCAAATC TTCACAAAAC CACTTGGTGA CAGGCCGACG ATATTTATAG AGATAATCCA GAGAGTAGGA TGCATGATGA AAGATGAGGA AGGGAAGGCT TACCAGAGTG GAGGATGTGG TGGCTTTGGC AAAGGCAATT TCTCTGAGCT CTTCAAGTCC ATTGAAGAGT ACGAGAAGAC TCTTGAAGCC AAACAGCTTG TGGGATGAAC AAGAGGAAGA ACCAACTAAA ATGTTGTGTA ATTAATGTAT AACTGCTTTA TGTTATCAAA ACAAT |
| Length | 1425 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2238698.. 2240224 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G06570.1 |
| Description | phytoene desaturation 1 |
| TAIR curator summary | Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. |
| Alias | [HPD][HPPD][PDS1][4-hydroxyphenylpyruvate dioxygenase][phytoene desaturation 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.7082 |
Ahg946431 | |
| 7.34847 |
Ahg496351 | |
| 14.8997 |
Ahg477362 | DEAD box RNA helicase 1 |
| 17.7482 |
Ahg488004 | alpha/beta-Hydrolases superfamily protein |
| 17.8326 |
Ahg478882 | cytochrome P450, family 72, subfamily A, polypeptide 15 |
| 18.2483 |
Ahg492904 | Ras-related small GTP-binding family protein |
| 19.2873 |
Ahg950030 | homogentisate 1,2-dioxygenase |
| 20.445 |
Ahg495066 | Putative thiol-disulphide oxidoreductase DCC |
| 23.4307 |
Ahg918162 | NAC domain containing protein 102 |
| 26.7208 |
Ahg937141 | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|