| Annotation |
|---|
| Description | jgi|Araly1|919553|scaffold_100834.1 |
| Sequence |
CCTAATCTCA AAATCGACTG ATGTTAGCGA TTCGATCGTC GAATTACCTC CGATGCATAC CTTCTCTCTG TACTAAAACC CAAATCTCTC AATTCTCCTC CGTGTTACTC TCTTTTAGCC GCCAAGTTTC CCACTTGCGC CTTACCTCGT GCCATAGAGC CATGTCTTCT TCCCGCCCTT CTGCATTTGA CGCTCTCATG TCCAATGCTC GCGCAGCTGC CAAGAAGAAG ACGCCCCAGA CCACTACATC GTCTCGCTCT CCGAATAAAA GGAAAATTGG GGAAACCCAA GATGCTAATT TGGGCAAAAC CCTTGTTTCC GAAGGTACAC TTCCAAAAAC GGAGGATCCG GTGGAGCCTA TTTCTGATTC TGCAAAACCC AGATCGGATA CGTCGTCAGT TGCGGAAGAT TCGAAGACCG GAACGAAAAA GGCTAGGACT TTGAGCAAGA CGGATAAAAT TGACGAAATG AAGAGCAAAA TTGGATTGTT GAAGAAGAAG CCTAATGATT TCGATCCTGA CAAAGTGTCT TGCTGGGAGA AAGGGGAGAG AGTTCCGTTT CTGTTTCTCG CATTGGCTTT TGATCTGATT TCAAATGAAA GTGGGCGAAT TGTGATTACT GATATTCTGT GTAACATGTT GAGAACCGTT ATTGCCACCA CTCCTGAGGA TTTGGTTGCT ACTGTTTACC TTGCGGCAAA TGAGATTGCC CCTGCTCATG AAGGTGTAGA ATTGGGAATT GGTGAGGGTA CAATTATCAA GGCTATCTCT GAAGCTTTTG GTAGAACTGA GGATCATGTT AAGAAGCAAA ATACGGAACT GGGAGACTTG GGGCTTGTTG CAAAAGGAAG CCGTTCAACT CAGACTATGA TGTTCAAGCC CGAACCATTG ACTGTTGTCA AGGTGTTCGA TACGTTTCGA CAAATTGCTA AGGAAAGTGG AAAAGATAGC AATGAAAAGA AGAAGAATCG AATGAAGGCA CTTCTTGTGG CAACAACAGA CTGTGAACCA CTTTACTTAA CACGTTTACT TCAGGCAAAA TTGCGGTTAG GGTTCTCAGG TCAGACTGTC TTAGCTGCCT TGGGACAAGC TGCTGTATAT AATGAAGAGC ACTCAAAGCC ACCCCCAAAT ACCAAGTCTC CTTTAGAAGA GGCTGCGAAG ATTGTTAAAC AAGTATTTAC GGTACTTCCT GTCTATGACA TTATTGTTCC TGCTCTTCTA ACCGGTGGAG TGTGGAATCT TCCAAAAACT TGTAACTTTA CATTGGGTGT TCCAATTGGA CCCATGCTTG CAAAACCAAC CAAAGGTGTA GCAGAGATAC TGAATAAATT TCAGGACATC GTTTTCACAT GCGAATACAA ATATGATGGG GAACGTGCAC AGATACATTT TTTGGAAGAT GGTACATTTG AGATATATAG TCGAAATGCT GAAAGAAACA CTGGGAAGTA CCCGGATGTT GCTCTTGCAT TATCAAGATT AAAGAAGCCC TCTGTGAAAT CTTTTATTCT GGATTGTGAG GTTGTTGCTT TCGACAGGGA GAAAAAGAAA ATTCTTCCGT TCCAGATTTT GAGCACTCGA GCCCGTAAAA ATGTGAATGT CAATGATATC AAGGTTGGCG TATGCATCTT TGCTTTTGAC ATGTTATATC TAAATGGCCA ACAACTTATC CAAGAGAATC TTAATATTCG CCGAGAGAAG CTATACGAAT CATTTGAAGA AGATCCTGGG TATTTCCAGT TTGCAACTGC TCTAACATCT AGCGATATCG ATGAAATCCA GAAGTTTCTT GACGCTTCTG TTGATGTTGG CTGTGAAGGT TTAATCATTA AAACATTGAA CTCGGATGCT ACCTATGAGC CTGCCAAGCG ATCGAATAAT TGGCTAAAAC TGAAGAAAGA CTATATGGAC AGCATTGGGG ACTCAATGGA TCTTGTACCA ATTGCTGCTT TCCATGGACG TGGCAAACGC ACAGGTGTCT ATGGTGCATT TTTACTCGCT TGCTATGATG TTGATAAGGA AGAGTTTCAG AGCATTTGTA AAATCGGTAC TGGATTTTCT GATGCCATGC TTGACGAACG GTCGTCCAGT CTTCGCTCTC AAGTGATTGC TACTCCAAAA CAATACTACC GAGTTGGAGA CAGCCTCAAT CCAGATGTTT GGTTTGAGCC CACTGAGGTC TGGGAAGTGA AAGCAGCTGA CTTGACAATT AGCCCTGTGC ACCGTGCAGC TACCGGCATT GTGGATCCTG ATAAGGGAAT TTCTCTTCGT TTTCCTCGTC TACTTCGTGT ACGGGAAGAC AAAAAGCCAG AGGATGCAAC ATCATCTGAG CAGATTGCTG ATATGTACCA AGCTCAGAAA CACAATCATC CAAGTAATGA AGTCAAAGGT GACGACGATT GAACAACTGT AATCTGGTCT CA |
| Length | 2422 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2868188.. 2873243 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G08130.1 |
| Description | DNA ligase 1 |
| TAIR curator summary | Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. |
| Alias | [ATLIG1][LIG1][DNA ligase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg939002 | sacI homology domain-containing protein / WW domain-containing protein |
| 5.47723 |
Ahg472063 | actin-related protein 4 |
| 5.91608 |
Ahg939518 | LMBR1-like membrane protein |
| 8 |
Ahg930502 | BLISTER |
| 10 |
Ahg496832 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 10.6771 |
Ahg487555 | Calcium-dependent phospholipid-binding Copine family protein |
| 10.7238 |
Ahg941855 | pyrimidine d |
| 13.4907 |
Ahg495846 | |
| 13.5647 |
Ahg936501 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
| 15 |
Ahg904230 | varicose-related |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|