| Annotation |
|---|
| Description | jgi|Araly1|921548|scaffold_102829.1 |
| Sequence |
CTGATTCCCA ACAAGTTTGG AAGATGGGTT TTGTTCTGTC TGACGAATTG TTGGGAGCTT TTGCTCCGAT TCTGGTGTAT TGGGTTTATT CTGGGGTTTA TGTGGGACTC TCTTCGTTGG AGAGTTATAG ATTGCATTCA AAGGTTGAGG AAGAAGAGAA GAATCTTGTC TCCAAGTCAA ATGTTGTTAA AGGTGTTCTT CTCCAACAGC TTATTCAGGC CATCGTCGCT ATCCTTCTGT TCACGCTCTT TGAATATGTT GTGGTTCGTC TGCAGGTGAC AGGAAGTGAT GCCGAGTCCA GCACACAGCA ATCTTCCATA TTGGTTCTAG CTGGTCAGTG TGTAATTGCC ATGTTAGTCC TCGACACATG GCAATACTTC ATGCATCGGT ATATGCATCA CAACAAGTTC TTATACAAAC ATATCCACTC TCAGCACCAT AGGCTTGTTG TTCCCTATGC TTATGGAGCT CTATACAACC ATCCAATAGA AGGCCTTCTC CTCGATACAA TTGGTGGCGC CTTATCTTTT CTCATCTCGG GTATGTCTCC AAGAACTTCA ATCTTCTTCT TCTCCTTTGC AACCATCAAA ACCGTGGATG ACCATTGCGG ACTCTGCCTC CCCGGAAATC TCTTCCATAT CTTGTTTAAG AACAACACCG CGTATCATGA TGTGCACCAT CAGCTTTATG GAAACAAATT CAACTTCTCT CAGCCTTTCT TCGTCATGTG GGATCGGATT CTTGGTACTT ACATGCCTTA CTCGCTTGAG AAACGGAAAG ATGGCGGATT TGAAGCTCGT CCAACGAAAC AAGTTAAAGA CTGATTAAGT TGAGAGCCTG AGTTTTT |
| Length | 847 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 10508289.. 10509797 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G69640.1 |
| Description | sphingoid base hydroxylase 1 |
| TAIR curator summary | Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. |
| Alias | [SBH1][sphingoid base hydroxylase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 28.6356 |
Ahg488017 | K+ efflux antiporter 6 |
| 32.6803 |
Ahg471018 | |
| 42 |
Ahg486812 | Ubiquitin carboxyl-terminal hydrolase family protein |
| 68.4105 |
Ahg474557 | TATA binding protein associated factor 21kDa subunit |
| 72.0208 |
Ahg483047 | |
| 72.4983 |
Ahg900847 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| 73.7835 |
Ahg324617 | embryo defective 1703 |
| 78.4793 |
Ahg479742 | Endoplasmic reticulum vesicle transporter protein |
| 97.0567 |
Ahg943674 | transducin family protein / WD-40 repeat family protein |
| 99.544 |
Ahg485874 | Sugar isomerase (SIS) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
|
|
| Growth Chamber expression |
|
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