| Annotation |
|---|
| Description | jgi|Araly1|923657|scaffold_104938.1 |
| Sequence |
ATACTCGTAA GAAAATTACA ATGGCTCCAC AAGAAGAAGT GATGGAGAAA CAGAGCAACA ACAACAACAG TGACGTCATT TTCCGATCAA AGCTACCGGA TATTTACATC CCAAACCACC TCTCTCTCCA CGACTACATC TTCCAAAACA TCTCCGAATT CGCCACCAAG CCTTGCCTAA TCAACGGACC AACCGGACAC GTGTACACTT ACTCAGACGT CCACGTCATC TCCCGCCGAA TCGCCGCCGG TTTTCACAAA CTCGGCGTTA ACCAAAACGA CGTCGTCATG CTCCTCCTCC CAAACTGCCC CGAATTCGTC CTCTCTTTCC TCGCCGCTTC TTTCCGCGGC GCAATCGCCA CCGCCGCGAA TCCATTCTTC ACTCCGGCGG AGATCGCTAA ACAAGCCAAA GCCTCCAACT CCAAACTCAT CATCACCGAA TCTCGCTACG TCGACAAAAT CAAATCCCTC CAAAAGGACG ACGGAGTCGT TATCGTCTGC ATCGACGACA ACGAATCCGT CCCTATCCCT GACGGCTGCC TCCGATTTAC CGAATTGACT CAGTCAACAA CCGAGTCATC AGACGTAATC GACTCGGTTG AGATTTCACC GGACGACGTG GTGGCGCTTC CTTACTCCTC CGGCACGACG GGACTACCCA AAGGAGTGAT GCTGACACAC AAAGGACTAG TCACGAGCGT TGCTCAGCAA GTCGACGGCG AGAACCCGAA TCTTTATTTC CACAGCGATG ACGTCATACT CTGTGTTTTG CCCATGTTTC ATATCTACGC TTTGAACTCG ATCATGTTGT GTGGTCTTCG AGTTGGTGCT GCGATTCTGA TAATGCCTAA ATTTGAGATT AATCTGCTTT TGGAGCTGAT TCAGAGGTGT AAAGTGACGG TGGCTCCGAT GGTTCCGCCG ATTGTGTTGG CCATTGCGAA GTCGCCGGAG ACGGAGAAGT ATGATTTGAG TTCAATAAGA GTGGTGAAAT CAGGTGCTGC TCCTCTTGGT AAAGAGCTTG AAGATGCCGT TAGTGCCAAG TTTCCTAATG CCAAACTCGG TCAGGGATAC GGAATGACAG AAGCAGGTCC AGTGCTAGCA ATGTCGTTAG GTTTTGCAAA AGAGCCGTTC CCGGTGAAAT CAGGAGCTTG TGGTACGGTG GTAAGAAACG CCGAGATGAA AATAGTTGAT CCAGACACCG GAGATTCTCT TTCGAGGAAT CAGCCCGGTG AGATATGCAT CCGTGGTCAC CAAATCATGA AAGGTTACCT CAACAATCCG GCAGCTACAG CAGAGACCAT TGATAAAGAT GGTTGGCTTC ACACTGGAGA TATTGGATTG ATCGATGACG ATGACGAGCT TTTCATCGTT GATCGATTGA AAGAACTTAT CAAGTATAAA GGTTTTCAGG TAGCTCCAGC TGAGCTAGAG GCTTTGCTCA TCGGTCATCC CGACATTACT GATGTTGCTG TTGTCGCAAT GAAAGAAGAA GCTGCTGGTG AAGTTCCAGT TGCATTTGTG GTGAAATCGA AGGATTCAGA GTTATCAGAA GATGATGTGA AGCAATTCGT GTCGAAACAG GTTGTGTTTT ACAAGAGAAT CAACAAAGTG TTTTTCACTG AATCCATTCC TAAAGCTCCA TCAGGGAAGA TTTTGAGGAA AGATCTGAGG GCAAAACTAG CAAATGGGTT GTGATCGATG ATTGATTTCA ACCA |
| Length | 1714 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 25963825.. 25966328 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G51680.1 |
| Description | 4-coumarate:CoA ligase 1 |
| TAIR curator summary | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. |
| Alias | [4CL.1][4CL1][AT4CL1][4-COUMARATE:COA LIGASE 1][4-coumarate:CoA ligase 1][ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.79583 |
Ahg470210 | S-adenosylmethionine synthetase 1 |
| 6.48074 |
Ahg494777 | allene oxide synthase |
| 8.83176 |
Ahg941770 | arogenate dehydratase 5 |
| 11.225 |
Ahg944486 | cinnamyl alcohol dehydrogenase 5 |
| 14.3875 |
Ahg924173 | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
| 19.0788 |
Ahg495497 | O-methyltransferase 1 |
| 27.8388 |
Ahg949125 | respiratory burst oxidase homologue D |
| 29.2575 |
Ahg489126 | Adaptor protein complex AP-2, alpha subunit |
| 41.4246 |
Ahg490671 | MATE efflux family protein |
| 42.4264 |
Ahg476695 | cytokinin oxidase 5 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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