| Annotation |
|---|
| Description | jgi|Araly1|924173|scaffold_105454.1 |
| Sequence |
TGATCCAACC AAAACCAAGT ATGAAAATTA ACATCCGAGA TTCCACCATG GTCCGGCCTG CCGCCGAGAC GCCTATCACT AATCTTTGGA ACTCCAACGT TGACCTTGTT ATCCCCAGAT TCCACACCCC CAGTGTCTAC TTCTACAGAC CCACCGGTGC CTCCAATTTC TTCGACCCTC AGATCATGAA GGACGCTCTC TCCAAGGCCC TCGTCCCCTT TTACCCCATG GCCGGTCGCT TGAAGAGAGA CGATGATGGT CGTATCGAGA TTGATTGCAA CGGCGCCGGT GTTCTCTTCG TCGTTGCCGA TACTCCCTCT GTCATCGATG ATTTTGGTGA CTTCGCTCCT ACCCTCAATC TCCGCCAGCT TATTCCCGAT GTTGATCACT CCGCCGGCAT CCACTCTTTC CCGCTTCTCG TTTTGCAGGT GACCTTCTTT AAATGCGGGG GAGCTTCCCT TGGGGTTGGT ATGCAACACC ACGCTGCAGA TGGTTTCTCT GGTCTCCACT TTATCAACAC ATGGTCTGAT ATGGCCCGTG GTCTTGACCT TACCATTCCA CCCTTCATTG ATCGAACCCT CCTCCGCGCT CGGGACCCGC CTCAGCCTGC TTTTCATCAT GTTGAATATC AGCCTGCCCC CAGTATGAGG ATCCCTCTTG ATCCGTCCAA ATCAGGCCCT GACAATACCA CCGTCTCTAT TTTCAAATTA TCACGCGACC AGCTTGTTGC TCTCAAGGCT AAATCCAAGG AGGATGGGAA CATTGTAAGT TACAGCTCAT ACGAGATGCT GGCAGGCCAC GTGTGGAGAT CAGTGGGCAA GGCGCGCGGA CTTCCAGACG ACCAAGAGAC CAAATTGTAT ATTGCAACTG ATGGAAGGTC CAGACTGCAC CCGCAGCTTC CCCCTGGTTA CTTTGGCAAT GTTATATTCA CCGCGACACC ATTGGCCGTT GCAGGGGATC TGCTATCAAA GCCAACGTGG TATGCTGCAG GACTTATTCA TGATGTTTTG GTTCGCATGG ACGATAACTA TCTGAGGTCT GCTCTTGACT ACCTGGAGAT GCAGCCTGAT CTGTCAGCCC TTGTCCGCGG TGCACATACC TACAAGTGCC CAAATTTGGG AATCACAAGC TGGGTCAGAT TACCCATTTA TGATGCAGAC TTTGGTTGGG GTCGTCCCAT ATTTATGGGA CCTGGTGGAA TTCCATACGA GGGTTTGTCG TTTGTGCTAC CAAGTCCTAC AAATGATGGC AGCCTATCCG TGGCCATTGC CCTCCAATCT GAACACATGA AACTGTTTGA GAAGTTTTTG TACGAGATAT GAGAGAGATA AGCGGCTGAA GA |
| Length | 1342 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 28328187.. 28329734 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G48930.1 |
| Description | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
| TAIR curator summary | At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth. |
| Alias | [HCT][hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg927518 | heat shock protein 91 |
| 6.32456 |
Ahg485760 | ARF-GAP domain 6 |
| 12.1655 |
Ahg475161 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 14.3875 |
Ahg923657 | 4-coumarate:CoA ligase 1 |
| 15.2315 |
Ahg473896 | MATE efflux family protein |
| 18.4391 |
Ahg482690 | PHE ammonia lyase 1 |
| 18.9737 |
Ahg481961 | cinnamate-4-hydroxylase |
| 22.9129 |
Ahg934322 | methionine adenosyltransferase 3 |
| 25.4558 |
Ahg492484 | AMP-dependent synthetase and ligase family protein |
| 31.4006 |
Ahg492090 | tryptophan synthase beta-subunit 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|