Detail



ID : Ahg925953

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|925953|scaffold_201514.1
Sequence
GACGGCTCAA GATCAGCCTC ATGAAAACCT TATATTCCCT GAGGAGGTTC TACCACGTGG AAACGCTCTT TAATGGAACT TTAGCTTTAG CTGGTCGTGA CCAAGAAACC ACCGGTTTCG CTTGGTGGGC CGGGAATGCC CGACTTATTA ATTTATCTAG TAAACTATTG GGAGCTCATG TAGCCCATGC CGGATTAATC GTATTCTGGG CCGGAGCAAT GAACTTATTT GAAGTGGCCC ATTTTGTACC CGAAAAGCCC ATGTATGAAC AAGGATTAAT TTTACTTCCC CACCTAGCCA CTTTAGGATG GGGGGTAGGT CCTGGGGGAG AAGTTATAGA CACCTTTCCG TACTTTGTAT CTAGAGTACT TCACTTAATT TCTTCTGCAG TTTTGGGCTT TGGCGGTATT TATCATGCAC TTCTTGGACC CAAAACTCTT GAAGAATCTT TTCCCTTTTT CGGTTATGTA TGGAAAGATA GAAATAAAAT GACCACCATT TTGGGTATTC ACTTAATTTT GTTAGGTGTA GGTGCCTTTC TTCTAGTATT CAAGGCTCTC TATTTTGGGG GCGTATATGA TACATGGGCT CCGGGAGGGG GGGATGTAAG AAAAATTACA AACTTGACTC TTAGCCCAAG TGTTATATTT GGTTATTTAC TAAAATCTCC CTTTGGGGGA GAAGGATGGA TTGTTAGTGT GGACGATTTG GAACATATAA TTGGAGGGCA TGTATGGTTA GGTTCCATTT GTATATTTGG TGGAATCTGG CATATCTTAA CCAATGAGTT TTACGGACCT ACGGGGCCAG AAGCTTCTCA AGCTCAAGCA TTTACTTTTC TAGTTAGAGA CCAACGTCTT GGAGCTAACG TGGGGTCTGC TCAAGGACCT ACATGTTTAG GTAAATACTT AATGCGTTCT CCGACTGGAG AAGTTATTTT TGGAGGCGAA ACAATGCGCT TTTGGGATAT GTTGAAAAAA GACATACAAC CTTGGCAAGA ACGACGTTCG GCAAAATATA TGACTCATGC TCCTTTAGGT TCCTTAAATT CTGTGGGGGG CGTAGCTACT GAGATCAATG CAGTCAATTA TGTCTCCCCG AGAAGTTGGT TATCTACCTC TCATTTTTTT CTAGGACTTT TCCTATTCGT GGGTCATTTA TGGCACGCGG GAAGGGCTCG GGCAGCGGCA GCGGGATTTG AAAAAGGAAT TGATCGTGAT TTTGAACCTG TTCTTTCCAT GACTCCTCTT AACTAAAGTA GTAGGTAAAA CAAGAA 
Length1276
Protein Sequence
Protein Residue
Map Locationscaffold_2: 11485045.. 11486506
Download Sequence
A.thaliana
AGI-codeATCG00280.1
Descriptionphotosystem II reaction center protein C
TAIR curator summarychloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.
Alias[PSBC][photosystem II reaction center protein C]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg475572 photosystem II reaction center protein C
4.24264 Ahg315523 photosystem II reaction center protein D
5.83095 Ahg932011
10.9545 Ahg931990 rRNA
15.6525 Ahg475613 ribosomal protein S11
17.9444 Ahg947169 Ribosomal protein S7p/S5e family protein
19.6977 Ahg923463 FTSH protease 1
22.3607 Ahg483416 Proline-rich extensin-like family protein
26.1534 Ahg495538
26.3818 Ahg492376 homeobox protein 22
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression