Detail



ID : Ahg927007

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|927007|scaffold_202568.1
Sequence
ACCGGTTTTC ATACCAAAAA AATGGCGGCC AATGCCTCAT TCGCCGCCGC ATTACTCATC GGACTCTCGC TTCTCTTCGC CGTCGTGGCG GAAGATCCGT ACAGATTCTT CGAATGGAAC ATCACTTACG GCGATATCTA CCCACTTGGA GTTCGCCAAC AGGGTATTTT GATCAACGGG CAGTTTCCGG GACCGGACAT TCACTCAGTT ACTAATGATA ATCTCATCAT CAACGTCTAC AATAGCCTCG ACGAACCTTT CCTCCTTTCA TGGAATGGAA TTCAGCAGAG GAGGAACTCT TTCGTTGATG GAGTGTATGG AACGACATGC CCAATCCCGC CGGGGAAGAA CTACACTTAT ATTCTTCAGA TGAAGGATCA GATCGGAAGT TTCTACTACT TCCCGTCTCT CGGTTTCCAC AAAGCCGCCG GTGGATTTGG TGGTATCCGT ATCCTTAGTC GCCCGAGAAT CCCTGTCCCT TTCCCTGATC CCGCCGGAGA TACCACCGTC CTTATCGGCG ACTGGTACAA ATCAAACCAC ACGGATTTGA GGGCACAGCT TGATAATGGT AAGAAGCTTC CTTTACCAGA TGGTATCCTC ATCAATGGTC GTTCAAGTGG TGCCACTCTC AATGTTGAAC AAGGTAAGAC ATACAGGTTG AGAATATCAA ATGTTGGGTT ACAAGACTCT CTCAACTTCC GCATTCAAGA CCATAAGATG AAAGTGATCG AAGTCGAAGG GACACATACC CTTCAGACTA CTTTCTCTTC GCTAGATGTT CATGTTGGCC AATCTTACTC GGTCCTTGTA ACTGCGGATC AAACTCCACG AGATTATTAC GTGGTCGTCT CTTCTCGGTT TACCTCTAAT ATCCTCACCA CCACGGGTAT TCTCCGTTAC AGTAACTCTG CTGGTGCTGT TTCTGGACCT ATTCCCGGTG GACCAACCAT TCAAATTGAC TGGTCCTTGA ACCAGGCTCG AGCCATCAGG ACTAACCTTA CAGCGAGCGG ACCAAGACCG AATCCACAAG GATCATACCA CTACGGTATG ATAAACACTA CAAGAACAAT CAGACTTGCT AGCTCTGCTG GTCAGGTCGA CGGGAAGCAA CGATACGCCG TGAACAGTGT ATCATTCAAA CCAGCAGACA CTCCTCTAAA AATCGCGGAC TACTTCAAGA TTGACGGTGT TTACAGAAGT GGAAGTATCC AATACCAACC CACTGGTGGA GGAATATACC TCGACACATC TGTTATGCAA GTTGATTACA GAACCTTTGT GGAGATTGTT TTCGAGAACT CTGAAGATAT TGTCCAGAGC TGGCATCTTG ATGGTTACTC TTTCTGGGTT GTTGGAATGG ACGGTGGGCA GTGGAGTCCA GCCAGTAGGA ACGAGTACAA TCTACGCGAT GCAGTCGCTC GCTGCACCGT GCAGGTATAT CCGAGCTCAT GGACAGCTAT ATTAATAGCA CTTGACAACG TAGGAATGTG GAACCTAAGA TCCGAGTTCT GGGCGAGGCA ATACTTAGGA CAACAGTTGT ATTTACGTGT CTACACACCC ACGAGTTCTC TCAGAGATGA ATATCCAATC CCCAAGAACG CTCTTCTCTG CGGTAGAGCC AGTGGTCGCC GCACCAGACC GCTTTGAGCT TGCGGTTAGA TAGAGAG 
Length1667
Protein Sequence
Protein Residue
Map Locationscaffold_2: 16052285.. 16054712
Download Sequence
A.thaliana
AGI-codeAT1G76160.1
DescriptionSKU5 similar 5
TAIR curator summary
Alias[sks5][SKU5 similar 5]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg905564 Leucine-rich repeat (LRR) family protein
4.58258 Ahg483654 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
5.74456 Ahg476393 germin-like protein 1
6.9282 Ahg938360 Eukaryotic aspartyl protease family protein
7.4162 Ahg487977 Protein of unknown function, DUF642
10.9545 Ahg930186 cell wall-plasma membrane linker protein
10.9545 Ahg480276 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
12.4097 Ahg494455 Pectinacetylesterase family protein
14.4222 Ahg478847 pectin methylesterase 3
14.4222 Ahg485617 Eukaryotic aspartyl protease family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression