Detail


ID : Ahg927661

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|927661|scaffold_300118.1
Sequence
ACCAAATCCG AACAAGTATC GATGTCGAGC TCAGGCCAAA CGCAGTTCCG TTATACGCAG ACGCCGTCGA AGGTGGTGCA TCTGCGGAAT CTTCCCTGGG AATGCGTCGA AGAGGAGCTC ATCGACCTTT GTAAACGATT CGGCAAGATC GTCAATACCA AGAGCAATGT CGGCGCCAAT CGCAATCAAG CCTTCGTCGA ATTTGCTGAC TTGAATCAAG CTATATCAAT GGTTTCGTAT TATGCTTCAT CTTCAGAGCC CGCACAGATT CGGGGCAAAA CTGTCTATAT TCAGTACTCT AATCGCCATG AAATTGTTAA CAATCAGAGT CCTGGAGATG TCCCTGGAAA TGTCCTCTTG GTTACCTTTG AAGGAGTGGA ATCTCATGAA GTCAGCATCG ATGTTATCCA TCTGGTATTT TCTGCTTTTG GATTTGTGCA CAAAATTGCC ACTTTTGAGA AAGCTGCTGG TTTCCAGGCA CTAGTTCAAT TTAGTGATGT GGAGACTGCA TCTGCGGCAA GGAATGCGTT GGATGGCAGA AGTATACCCA GATATTTGCT TCCAGAACAT GTTGGTTCGT GCAATTTGCG AATGTCTTAT TCAGCTCATA CTGATCTCAA CATCAAGTTT CAGTCCCACC GGAGCAGAGA TTACACAAAT CCATACCTTC CAGTGAATCA CACCGCAATG GACGGGTCTA TGCAGCCTGC CTTAGGTGCT GACGGCAAGA AAGTTGAATC TCAGAGCAAC GTCCTTCTCG GTTTGATTGA GAATATGCAG TATGCTGTCA CTGTGGATGT TCTTCAAACG GTGTTTTCTG CATATGGAAC TGTCCAGAAG ATTGCTATAT TTGAGAAGAA TGGTTCAACG CAAGCATTAA TTCAATACTC TGATATACCA ACAGCAGCAA TAGCCAAAGA AGCACTGGAA GGACACTGCA TTTATGACGG TGGCTACTGT AAGCTTCGAC TATCATACTC TCGTCATACT GATCTCAATG TTAAGGCGTT TAGCGACAAA AGCAGAGACT ATACACTCCC CGATCTAAGC CTACTTGCAC AGAAGGGTCC CGGAGTGTCG GCTTCTGCTC CACCAACAGG TTGGCAGAAC CCGCAAGTGC AAACTCAATA CTCAGGTTAT GGTGGAAGCC CATATATGTA CCCATCATCT GATCCCAATG GGGCTTCACC CTCAGGTCAT CCTCCTTACT ATGGTTGAGT TTACTTAAAA TTTCGGAT
Length1238
Protein Sequence
Protein Residue
Map Locationscaffold_3: 348788.. 351495
Download Sequence
A.thaliana
AGI-codeAT3G01150.1
Descriptionpolypyrimidine tract-binding protein 1
TAIR curator summaryEncodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.
Alias[ATPTB1][PTB1][POLYPYRIMIDINE TRACT-BINDING PROTEIN 1][polypyrimidine tract-binding protein 1]
Gene coexpression
MR
MR Locus Description
8.94427 Ahg473442 non-intrinsic ABC protein 6
11.7473 Ahg493259 RNA polymerases M/15 Kd subunit
16.5227 Ahg897667
17.7482 Ahg490751
18 Ahg483715 signal recognition particle receptor protein, chloroplast (FTSY)
18.0278 Ahg482574 E2F transcription factor 3
18.7617 Ahg492627 SWIB complex BAF60b domain-containing protein
20.0499 Ahg918912 secretion-associated RAS super family 2
22.9783 Ahg936241 Protein of unknown function, DUF617
34 Ahg333465 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression