| Annotation |
|---|
| Description | jgi|Araly1|934280|scaffold_402268.1 |
| Sequence |
AGTCAAAACA GAGTAAGGAA ATGGAGAAAC AGAGGAGGAG AGAAGAAAGC AGCATTCAAC AACCTCCTCC TCCATGGATG ATTCCTTTGA CACCTATGAA GCCCATTTCT CCGATCAGAC CATACACGAT GGATCCGATC TACCAATATA CAGTGGAAGA ACAATCGCAT CGGAGTCAAG TGGAGGAAAG AGGATTCGAC ATGGGTGGTC TTGATCACTT GTCTTTCAGT GATTTGCTAG CTTTATCCAA CACTAGACCT GTCTGTTTCT CCGGTCAGAC CTCTTGGGCT TGTAATGATT CCGGTCTGAT GATCAGAGAT GAAATTTCTC CCATCTGCCC AAACACTGTG GAGGAGGAAC AAGCTCATTG GAATCAAGTG GAGGAAAGGA GATTCGACAT GAATCAGTTG TCTTTTGGTG ATTTTCTGGC TCTATCCAAC AATGCATCAC TCTATTGCTC TGGTCAGACC ACCCCTTGGG ATGGTAATGT CTTAGAACCC ACAAGTGAGA GGGCTTTTGA TTCCGGTCTG ATCAGAGATG AGGTTGAGAT GCTGCAAAAA GGTAATGAAG CAGTGGATAA TCTGAGCTCA GTGAGTAACA ATGTTGCATC AGTCTATTTC TCCGGCCAGA CCCCTTGGGC CTCAGAACCT ACAAGAAACA CAGAGATGAT GCAACAAGGT AATGAAGCAG TGGACATTCT GAGCTCAGTG AGTAACAATG TTGCTGAAGA GATCATCAAA ACTCCTGAAA AACCAAAGAG GAAGAAGCAT AGGCCAAAGG TTGTTAGAGA AGCTAAACCC AAGAGGGAGC CTAAACCGCC AACTTCGAGG AAATCTGTTG TTGCTGATGG TCAGGAAAGC AAAACGCCAA AGAGGAAATA TGTGCGGAAG AAGGTGGAAG TCGAGAAGGA TCAAGAATCT ACTCCGGTTG AATCATCAGC AGCTGTAGAA ACATTTACTC ATGCGAAGAA GCTCTGTAGA CGAGTCTTGG ATTTTGAACC CGAAAACGGA GATAACCAGA CCAACAGCGA CCCAAAACAC GGAGATGAGA CGGAGCCTAG CTTGCCCAAG AGAAAATGCA GCCAAGGTAA AAGAAAGGGA ACGGAACCAA AGAAGAATGG AGGTAATCAA GATGGAGTTG ATCTTTCGAT GGCACAAGCT GCAAAGAGAA GACAAGGAAA AGAACCAACT TGTAGTGACA TAAATCTATC AGGGATTCAG TACGATGAGC AATGTGACTA CCAAAAAATG CATTGGTTGT ATTTCCAAAA CTTTCAACAG GAAGGGATTA GGTCGGATCC CATTTGCAGC ACATCATTCG CTGGACAACA ACATAAGGAT GTTTCTGCCT TTGACTCTAA CTGCTACAGT TTCACATCTC AGCCCAATGC TAATAGAGTC CTAACCATTA AAGAAAAACG CAAAGGTATC TTTCAAGGAA GGCAAGAGTC TGAGTTCAGT GTTCTCTTGG ATATGATAGA AACGCCGATA AAGACGAGAA CTACAGGCCA TGTTCGATTG CGGGATTTAT CTCCCATGAA TAAACTTGTG GAAGTTTCTC AGCAATTACC CTCAGGATAT CATAGCAAAC CAAAGCAGAA GAGTAATAAG ATTCTTGTTG ATACGCGGGT GACCGTGAGC AAAAAGAAGC GAATCTCTAA GTCTGAGAAA TCACAAACCA ACAAGAAAAC TCTTCTTCCA AATCCTTGCC AGTTTCCAGC TTCATTTTCT GGTCTTTCTC AAGATGAACT TTGGAAACAA CCTAACTTGG TTGAAGAAAT CAGTGAGCAA TTGCGTCTAT TAGACATCAA CAGGGAGAAT TCTGAAACTG CTCTCGTTCC TTACTCAATG AAAACACAAG AAAACCAGAT TGTCCTCTTC GGCGGTGGCG CTGGAGCAAT TGTGCCTGTA ACTCCTGTTA AAAAACGGCG CCCACGACCA AAGGTTGACC TAGACGATGA GACAGAAAAA GTTTGGAAAC TGCTATTGGA GAATATTAAT AGTGAGGGTA TTGACGGATC AGACGATCAA AAGGCGAAAT GGTGGGAGGA AGAACGTAAT GTGTTTCGAG GACGAGCAGA CTCATTTATA GCACGGATGC ATCTTGTACA AGGGGATCGA CGTTTTACGC CTTGGAAGGG ATCCGTTGTG GATTCTGTTG TTGGAGTATT TCTCACTCAA AATGTTTCAG ACCATCTTTC GAGGTATAAG CACTTACGTA ATTCTACTTC GAAACCAAAT CCAACACAAC AACAAGTCAC AAAACTAACT TGCTTTGTTT TTTTTTGTCC TTGTAGTTCA GCTTTCATGT CGCTGGTTTC CGAGTTCCCG GTCACTTCAG TGCCCAGCAG TAACTTTGAA GCTGGAACAA GCTCGATGCC TTCTATTCAA ATAACTTACT TGGACTCAGA GGAGTCGATG TCAAGCCCAC CCAATCACAA TCAGAGTTCT GTTATTTTAA AAAACACACA GCCTGATGAG GAGAAGGATT ATGTACATAC CAGTGAAACC TCCAGAAGTA GTAGTGAGAT TTCCAGCTCA GCCCATCAAT CAGTTGACAA AACCACGGAT TCAAAGACGT TCGTGGAACC AGATCGAAAA GGCTCAAGTG TAGAGGTTGA TAAGACAGGT CAGAACTGCC TTGTCCTAAA CCTGTTTACA TCTGAAGATT CTGCACTTAC ATGTCAACAT TCGATGGTTT CTGATGCTCC TCAAAATACC GAGAGAGCAG GATCAAGCAC AGAGATCAAC TTAGAAGGAG AGTATCGTAC TTCCTATATG AAGCTCCTAC AAGGGGTACT AGAAGAGTTC AATCAAAAGA ATCAGTATGA AGTTGGGGTT TTAAGCAATC CTGGAAGCTT ACAAGTATCA CCAAATATGT CTCCCGGTGA TTGTAGCTCA GAAATTACTG ATTTCCATTC ATTGAAAAGG CCCACAAAAT CTTCTGATGA TAGTTATGAA CCTTATTGTT GCTATCAGCA AGATGGTGAT GTTTTGAGTT GTCAGAAACC TGAGATGCCT GAAAGCTCTA GCAGCGTTCG TTCGACAAAA CGCAAACGCA GCTTCCAGAT TCCAGATCTT AATGAAAGCA CGAGTTGTCT TGATGTCATA GAAGACACAG AAAATCCACC AGATCCTTAC TCAAGGCAGC TTCCAGACTC ATCGTGCAAA GAGCTCAATC CCACAGATGC TGCTACCTTA AATGCAAAAG GAAAAAAGGT TTTAAAGGAG AAAAAAGAGG CGTTTGATTG GGATAGTTTA AGAAGAGAAG CAGAAGGTAG AGAAGGAAAA AGAGAAAAAA CGACAAGGAC AATGGACTCT GTGGACTGGG AGGCAATAAG AACAGCGGAT GTTAGTGAAG TTGCCGAAAC AATCAAGAAA CGTGGGATGA ACCATATGCT TGCGGAACGT ATACAGGGCT TCCTTAATCG ACTGGTCGAC GAACACGGTA GTATCGATCT TGAATGGTTG AGAGACATTC CACCTGATAA AGCAAAAGAA TATCTTCTGA GTTTTAGAGG ATTGGGCCTA AAAAGTGTGG AGTGCGTGCG GCTTCTAACA CTGCACCATC TTGCGTTTCC AGTTGATACG AATGTTGCGC GCATAGCTGT GAGACTAGGA TGGGTACCCC TTCAGCCACT GCCAGAGTCA CTTCAGCTGC ATCTTCTAGA AATGTATCCT ATTCTTGAAT CTATTCAAAA GTATCTTTGG CCACGTCTCT GCAAACTTGA CCAAAAAACA TTGTATGAAT TACACTACCA GATGATTACC TTTGGAAAGG TGTTTTGCAC AAAGAGCAAA CCTAATTGCA ATGCATGTCC GATGAGAGGA GAATGCAGAC ATTTTGCTAG TGCGTTTGTA AGCGCAAGGC TTGCTTTACC CAGTACAGAG AAAGGTATGG GGACACCTGA TAAAAACCCT TTGCCTCTGC ACCTCCCAGA ACCACTGTAT AGAGAGCAAG GGTCTGAAGT AAAACAGCAC TCAGAACCAG CGAAAAAGGT CACATGTTGT GAACCAATCA TTGAAGAGCC AGCATCACCG GAGCCAGAAA GCGCACAAGT ATCAATAGCT GACATAGAGG ATGCATTTTT TGAGGATCCG GAAGAAATTC CTACAATCAG GCTAAACACT GATGCATTTA CCAGTAACTT AAAGAAAATA ATGGAACAGA ATCAGGAACT ACAAGACGGA AACATGTCCA CTGCTTTAGT TTCACTTACT GCTGAAGCTG CTTATCTTCC AATGCCGAAG CTCAAGAATA TCAGTCAGTT AAGGACAGAA CACCAAGTTT ACGAACTTCC AGACTCGCAT CCTCTTCTAG TTCAGTTGGA GAAGAGAGAA CCTGATGATC CATGTTCTTA CTTACTTGCT ATTTGGACGC CAGGTGAAAC GGCTGATTCC ATTCAACCAG CTGTGAGCAA GTGTATATCC CAAGAAAATG GTAAGATTTG TGATGAGGAG ACTTGTTTCT CATGCAACAG CATCAAGGAA GCGAGATCTC AGACTGTGAG AGGGACAATC TTGATACCTT GTAGAACCGC AATGAGGGGT AGTTTCCCAC TCAACGGAAC TTATTTTCAA GTAAACGAGG TGTTTGCGGA TCATGCTTCT AGCCTAAACC CAATTGATGT TCCAAGGGAA ACGTTATGGG ACTTAACAAG AAGAACTGTC TATTTTGGAA CTTCTATACC TACAATATTC AAAGGTTTAC CGACAGAGAC AATTCAGCAA TGCTTTTGGA GGGGGTACGT ATGTGTACGT GGATTTGACC GTAAGACGAG AGGACCAAAA CCTTTGATAG CCAGATTGCA CTTCCCGGTA AGCAAAATGA AGTCACGGGC TAACCCGCCT AATCAGAGTG CTACGAAGGC AAGCAAATAA ATACAGACTT ATAGTTAGAC T |
| Length | 4901 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 16440861.. 16445755 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G36490.1 |
| Description | demeter-like 1 |
| TAIR curator summary | A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts. |
| Alias | [DML1][ROS1][demeter-like 1][REPRESSOR OF SILENCING1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.06226 |
Ahg321506 | vacuoleless1 (VCL1) |
| 8.66025 |
Ahg496800 | indole-3-acetic acid inducible 9 |
| 14.6969 |
Ahg949853 | AT hook motif-containing protein |
| 16.2481 |
Ahg914725 | FAD/NAD(P)-binding oxidoreductase family protein |
| 16.7332 |
Ahg474980 | Protein kinase superfamily protein |
| 17.4356 |
Ahg473945 | calcium-dependent lipid-binding family protein |
| 18.7617 |
Ahg350108 | |
| 22.1811 |
Ahg497366 | plant U-box 9 |
| 24 |
Ahg943759 | Nucleotidyltransferase family protein |
| 24.1454 |
Ahg496904 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|