| Annotation |
|---|
| Description | jgi|Araly1|321506|fgenesh1_pm.C_scaffold_4001563 |
| Sequence |
ATGGCAAACG TGTCTGTTGC TGCGGAATGG CAGCTTCTCT ATGATCGATA TTACAGGAAG CCTGAGATAT ACCAGATGAA ATGGAAACAT GTAGATTTGA GTCGTAACAA GGTGGCGTGT GCTTCATTTG GTGGGCCAAT TGCAGTCATT CGAGATGACT CGAAGATTGT CCAATTATAT GCTGAATCTG CTCTAAGAAA GCTCCGCATC TTTAACTCAG CAGGTATACT TCTCTCTGAG ACGGTCTGGA AGCATCCCGG GGGACGCCTG ATCGGAATGT CCTGGTCAGA TGATCAGACA CTAATTTGTA TTGTCCAAGA TGGCACTATT TATCGTTATA ACATCCACGC TGAGCTCATT GAGCCCAATA TGTCAATGGG CAAGGAGTGC TTTGAGCAGA ATGTGGTGGA GTGTGTCTTC TGGGGAAATG GTGTTGTCTG CTTAACAGAA GGAGGGCAGT TGATCTGTAT TTTCGATTTC AAGACAATGA AGCCTTCTAA GTTGCCTGAT GTACCGGGGT TAGCAGAAGA TGATCTGCTT CAGCCAATTT GCTTGACTGT GAGGGAACCT AAGTACACGA TGTCTGGGAT TGCTGAGGTG TTGGTAGCAG TTGGCGATGA TATTTTTGTT GTGGAGGAGG ACATGGTTCA AACTATTAGG TTTGATGAGC CTAGTATTGA AGACTCTGAG ATGCAGAATG ATGATTCTGG GAATTTGATT GGAGTGGTCC AGAAGATGAT TGTATCACCT AATGGAAAAT TTCTAACACT CTTCACTCAT GATGGCCGGA TTGTTGTTGT TGACATGGAA ACAAAACAAA TTGCTATTGA CTACTGTTGT GAGTCAGCCC TTCCTCCGCA GCAAATGGCT TGGTGTGGAA TGGATAGCGT TCTTCTCTAT TGGGATGAGG ATTTAATGAT GGTGGGTCCT GTAGGAGACC CAGTTCACTA TTTCTACGAT GAACCTGTAA TTCTTATCCC AGAATGCGAT GGAGTGAGAA TATTATCTAA CACGAGCCTT GAATTTCTGC AAAGAGTACC TGATTCTACC GAGTCAATCT TTAAGATTGG AAGCACCTCA CCTGCAGCTT TGCTATATGA TGCTTTGGAT CATTTTGACA GGCGAAGTGC TAAGGCAGAT GAGAATTTGA GATTAATTCG TTCATCACTG TCTGAAGCTG TTGAATCCTG TATTGATGCC GCTGGCCATG AGTTTGATGT AACTCGTCAG AGGGCACTGT TACGAGCGGC AAGCTATGGA CAAGCTTTCT GCAGCAATTT TCAGCGTGAA CGTGTCCAAG AGACTTGTAG AACGTTACGG GTTCTAAATG CGGTTCGAGA TCCTGCTATT GGCATACCTC TTAGCATTCA GCAGTACAAG TTACTGACAC CAATGGTTTT GATTAGTCGC CTTATTAATG CTCATTGCCA CCTTCTTGCT CTGCGGATAT CTGAGTACTT AGATATGAAT AAAGAAGTGG TGATAATGCA TTGGGCATGT GCAAAGATAA CTGCTTCACC ATCAACTCCA GATTCTCATC TTCTTGAAAT TTTACTTGAT AAGCTCCAAC TATGCAAAGG AATATCTTAT GCTGCAGTGG CCACTCATGC TGATAACTGT GGCCGTCGAA AGTTAGCTGC AATGCTAGTT GAACACGAAC CACGCTCCAC GAAACAGGTA CCTCTTTTAT TAAGCATTGG GGAGGAAGAC ACTGCTTTAG TGAAAGCAAC TGAGAGCGGT GACACCGACC TGGTTTATCT GGTCATATTT CATATATGGC AAAAGAGGCC TCCTTTGGAA TTCTTTGCGA TGATCCAAGG AAGAGTTTTG GCACGTGATC TATTTGTAGC TTATGCACGG TGTCATAAAC ATGAATTTCT GAAGGATTTT TTCTTATCTA CGGGCCAGAT TCATGAGGTA GCTTTTCTTT TATGGAAAGA ATCATGGGAT ATGGGTAAAA ACCCAATGGC TAGCAAAGGA TCCCCGCTGC ACGGTCCGCG CATAAAACTA ATAGAGAAGG CCAGAAACCT TTTCTCCCAG ACAAAGGAAC ACACTTTCGA GTCTAAGGCT GCTGAGGAGC ATGCAAAACT CCTGAAGATA CAACATGAGC TAGAAGCTAG TACAAAGCAG GCTATCTTTG TTGATTCAAG CATCAATGAT ACTATACGCA CATGTATTGT ACTGGGTAAT AATCGTGCTG CAATAAAAGT GAAGACAGAA TTCAAGGTCA GTGATAAAAG ATGGTATTGG CTGAAAGCAT TTGCTCTGGC TACAATCAAA GACTGGGCTG CGCTTGAAAA GTTTTCAAAG GAAAAGAGAC CACCAATGGG GTTCCGTCCA TTTGTGGAGG CATGCATTGA CGCAGATGAG AAAGCGGAAG CTCTAAAATA CATCCCTAAA CTATCAGATC TTGTCGAAAG AGGCGAGGCT TATGCTCGTA TTGGAATGGC AAAGGAAGCA GCTGATGCAG CAGCTCAGGC AAATGATGGA GGAGAATTGC TTGAGAGATT CAGGAAGACG TTTGTACAGA ATGCTATTTT CGATACCTTG AAAATGCCTT TCCAAGGAGC CTCCTAG |
| Length | 2577 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 17431303.. 17435463 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G38020.1 |
| Description | vacuoleless1 (VCL1) |
| TAIR curator summary | necessary for proper vacuole formation and morphogenesis in Arabidopsis |
| Alias | [EMB258][MAN][VCL1][MANGLED][VACUOLELESS 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.4641 |
Ahg492913 | VPS54 |
| 3.74166 |
Ahg494587 | Calcium-binding EF-hand family protein |
| 3.74166 |
Ahg935440 | ARABIDILLO-1 |
| 5.19615 |
Ahg485153 | Ubiquitin carboxyl-terminal hydrolase-related protein |
| 5.47723 |
Ahg483031 | RNI-like superfamily protein |
| 6.32456 |
Ahg898366 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases |
| 7.74597 |
Ahg950187 | DNA topoisomerase 1 beta |
| 8.06226 |
Ahg934280 | demeter-like 1 |
| 14.8324 |
Ahg471984 | Protein phosphatase 2A, regulatory subunit PR55 |
| 17.7482 |
Ahg903021 | auxin transport protein (BIG) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|