Detail



ID : Ahg935487

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|935487|scaffold_403475.1
Sequence
TTTTGTTATA CCCAACTCTA TCATGGCGAG GAAGCGAGGA AGCGAGTTCT CTCGAGCAAC CGATGTATCG CTGTCCCACG CAAGTGGCAC CATGCTTCTT AAGTGTAGAT GCAATTGCAG CATAGCGTCA AAACTGTTTG CTGAAATGCC TGAGAAGGAC TTGATTTCAT GGAACTCAAT GATCGATGGA TATGTAAAAC ACGGAAGAAT CGAGGATGCT AAGGGTTTAT TTGATGTGAT GCCGAGAAGA GATGTGGTTA CTTGTGCTAC CATGATTGAT GGGTATGCAA AGTTAGGTTT TGTTCATCAG GCTAAGACTC TGTTTGACCA AATGCCTCTT AGAGATGTTG TGGCATATAA TTCTATGATG GCTGGTTATG TTCAAAACAA GTGTCACATG GAAGCTCTTG AAATATTTAA CGACATGGAA AAGGAGAGTC ACTTGTCACC CGATGAAACG ACTTTGGTAA TCATTCTTTC TGCAATTGCT CAGCTTGGCC GATTATCGAA AGCCACCGAT ATGCATTTGT ATATTGTGGA GAAACAATTC TATCTAGGTG GAAAACTCGG CGTTGCTCTC ATTGATATGT ATTCGAAATG CGGAAGCATA CAACACGCCA TGTTGGTTTT CGAGGGAATC GAAAACAAAA GCATTGATCA CTGGAATGCT ATGATTGGTG GGCTAGCTGT TCATGGTCTT GGAGAATCCG CATTCAATAT GCTCTTGCAG ATCGAGAGAC TCTCCATAAT ACCAGATGAT ATCACCTTTG TTGGAGTTTT AAATGCTTGT AGCCACTCTG GATTAGTGAA GGAAGGCCTT CTCTGCTTTG AGCTCATGAG GAGAAAACAC AAGATAGAAC CAAGGTTGCA ACACTATGGG TGTATGGTCG ACATACTATC GAGATCCGGT AGTATAGAGC TAGCCAAAAA CTTAATAGAG GAAATGCCAA TTGAGCCAAA TGATGTCATA TGGAGAACAT TTCTCACCGC TTGTAGTCAC CACAAGGAGT TTGAAACGGG AGAGCTTGTC GCGAAACACC TTATTTTGCA GGCTGGCTAT AACCCGAGCT CATATGTGCT TCTCTCTAAC ATGTATGCTA GTTTTGGAAT GTGGAAGGAT GTTCGTAGAG TTAGAACGAT GATGAAGGAA AGAAAGATAG AGAAAATTCC TGGATGTAGT TGGATTGAGC TCGATGGAAG AGTCCATGAG TTCTTTGTAG ATAGCATTGA AGTTTCCAAT ACATTGTAGA TAAAACGATT GTGCAGCGAT 
Length1270
Protein Sequence
Protein Residue
Map Locationscaffold_4: 20940444.. 20941899
Download Sequence
A.thaliana
AGI-codeAT2G45350.1
DescriptionPentatricopeptide repeat (PPR) superfamily protein
TAIR curator summaryEncodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.
Alias[CRR4][CHLORORESPIRATORY REDUCTION 4]
Gene coexpression
MR
MR Locus Description
46.3141 Ahg479405 NAD(P)-binding Rossmann-fold superfamily protein
71.638 Ahg470767 NAD(P)-binding Rossmann-fold superfamily protein
93.0161 Virus1236
94.615 Ahg943400
95.205 Ahg472249 expansin 11
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression