| Annotation |
|---|
| Description | jgi|Araly1|492913|fgenesh2_kg.7__2346__AT4G19490.1 |
| Sequence |
ACCCAGAGAG GGCTTTCCTC AGTGAGTCCT CCGTTCTTCG ATTCTCTTCC AGATCCAAAG TCTCACCAAA CTTTCTCACA ACACACACAA TTTGATTCGA TCCACACTCT TCAAATCCCC AAAGATCCCT CCGATTTCAA AATTCGATTT TTTGGTTCAT GATTTTGATT TCGTGAAGGT CTTATGGATT CACACCCTTC CATAATGGGA AGGTCCATTA CCAATTCCAA CCGATCGGGC TTAGATCTTG GTCGTCCTTC TTCGTCTTCG TCTTCTTCTC CTTCACCGTT AACCAAATCG ATCTCCGATG CAAGTAGTCA GAGTCTCTCT TCGATCCTTA ACAATCCACA TGGAGGTAAG TCTGGTGTTT ATGGTTCCGA TGCTTCTTGG GTTGGTTGGT GGTCTTCATC GACATTTGTA GCTCCGTCTG AGTTCGCGCC TGTTGCTTCA ACGAAGCTCC CTGGTTCGGA GCTTACCAGA TCCGACTTCC ATGGCTACGT TTCTTCGATC TCTGAGTCTC ATGGTAGGTT TGAGGATATT AGGAAGCATA CGAGGGAAGA GAGCTCTGGG TTTGATCAGG AGAGCCATGT ATCGGGTTTA GCTGCGTGTT TGCGTGAGGT TCCTTCGCTT TACTTTAAGG AGGATTTTGC TCTTGAGGAC GGAGCTACAT TTCGTTCTGC TTGCCCTTTC TCGAGCTTGA ATGAGAATCT AGCGCTTCAA GAGAAGTTGT CACAGTATCT TGATGTGGTG GAGCTGCATC TTGTGAAGGA GATATCTGTT AGGTCTGATT CGTTCTTCGA GGCTCAGGGA CAGTTGCAGG ATTTGAATGT GAAGATTGTT GAGGGTTGTA GTAGGATTCG TGAGTTGAAA GAGACTATTC GGCTCCTGGA CAGGAATTTG GTAGATTCAG CTCGACAGAT TCAAGAGCTG AGCTCAACTA GGATTAATAT GTTGGAGCTG CAACGTAAAT TGAGACTTAT TTTGTATGTT AACCAAGCTC TCTCTGCACT CAAATTGCTC GTTGCGTCCG CAGATTGTGC TGGAGCTTTG GATATAACTG ACGATCTCCA AAACTTGTTG GCTGGGGATG AGCTAACTGG TCTATACTGC TTCCGCCATC TTCGGGATCA TGTTACTAGT TCCATAGATT CCATAAACAG TATTCTCACA TCAGAATTCA TGCGTATCTC CATACATGAT ACTGGGGAGA TAGATGTACT GATTTTATCT GCTGCAAAAA TACGGGGATC CATTTCATCT AACGGGAAGA CCGGTGAAGA AGTTAAGCTA GAAGAAGAGG ATACCTCTAC CTTATGTGAT CGGCTTCTTC CTCTAGTTAT TGGATTGCTA AGAACGGCAA AGTTCCCTTC AATTTTGAGG ATGTATCGTG ATACACTCAC ATCCGAAATG AAAAATGCAA TCAAGAAAGC AGTTGCTGAG CTGCTTCCCA TTCTTGTTGC AAGATCGCTC GAATCTGATT TTTCACATGG GGAGCGCTCT GTAGATGTTG AAAACATACT TATTCCTAGT GCATATACAG GTGGTGGCTT ATCTCTCGCG AGCAAGTTGA GGACTCTGTC ATCTGAGGCA TTTGTTAATC TCTTAACTGC TATATTTAAG ATTGTTCAGG CACATCTAGT CCGGGCTTCG GAAGTGAAAA AAGCAATTGA ATGGATTCTC TGCAATATCG ATGGACATTA TGCCGCTGAT TCAGTTGCAG CTGCAATTGC TGTTGGTGCT GTAGCAGCCG AAACAGCTCA GGAAACAGGT TTCCAAGGCG GGTCATTAGT GTCTTCTCCA TTGGGTAAGG CTACCTCAAA GGCCCTTCCA TTGCAGGGAA AATCGAGTGA CGCATCAAGC TTGATGAACA TGTCAAGAAA CTTCAGGGCC GATGTCTTGA GAGAAAACAC TGAAGCTGTC TTTGCGGCTT GTGAGGTTAC TCATGGTAGG TGGGCTAAGC TACTAGGAGT TCGCTCTCTT CTTCATCCAA AATTGAAATT GCAGGAGTTC ATGAGCATTT ATGATCTGAC CCAAGAATTT ATAACAGTTA CGGAGAAGAT TGGTGGAAGG TTGGGATCTA GTATTCGTGG GACGCTGCAA TCACAAGCCA AAGCCTTTGT TGATTCCCAG CATGAAGCTC GGATGACAAA ACTAAAAGCT GTGCTTGATC AAGAAACATG GGATGAGATA GATGTTCCTG AAGAATTCCA ATCCATAATC ATTTCTCTTT TTGCATCCCA ACAGTTGATT TCTGGGAAAG TTGATGATGC TGATCTTAAA ACATACCACA GTAATCGGCT CCCTCTCAAT GGGTCTCTCA CTTCTGGAAC TGGGGATCAA AATACTGAAT TACGAAATCA AAAATCTGAA TCTAGTGAAG GTCCTGCAGT TAGTGATGCA CAAGTGAAAT CCACAGTCTC ACCTGAGTCT CTTGAAAGAA GCAAGGCTGG TGTATCTTCA GTTACGAATA ATCAAAGTAA TCAGAAGGCA CACGGAAAAT CTAACCTTTT CTATCAAGGA GTTGGTTACC ACATGGTAAA CTGTGGGTTA ATATTGCTCA AGATGTTGTC AGAATACATT GATATGAACA ATTCTTTGCC AGCTCTGTCC CCGGAAATTG TTCGTCGTGT TGTTGAAGTG TTGAGATTTT TCAACACTCG GACATGTCAA CTTGTTCTGG GTGCTGGTGC TATGCAGGTA TCTGGTTTGA AGTCCATAAA GGCGAAACAC TTGGCGCTTG CAAGTCAAGT AATCGACTTC ACTTACACTA TTATTCCTGA AACCAGAAGA ATTCTGTTTT CAAAAGTACC TGAGACGAGA AAGCCTCTGT TGTCAGTAGA GATGGATAAA GTTGCTCAGG ATTATAGAAT TCATCGAGAT GAAATATACA CAAAACTGGT TCAGATTATG AGAGAAAGAC TATTGGCCCA TCTTCATGGT TTGCCCAAAG TTGTTGAGGG CTGGAACAGA CCTCCAGACA CCAATAAACA AACTAAAGAG TTTGCATGGC CACTCACAAG GGAAGTTGGA TACCTTCACC GTGTGTTGTC TGAGACATTG CATGAAGCCG ATGTTCAAGC AATCTTCAGG CAGGTGATTT CAATTATCCA CACACAAACC TCTCAAACAC TTACGAACTT GGAGATAAGC TCTCCAGAGG CAAAGAAAAG GCTGAAGCTT CATGTTGAGC TAATCCTCAA ATGTATCCGG TCGTTACCAT CCGAAAATGC CAATCAATCA GGCATCCCAA ACTGGGGACA ACTAGATGAA TACTTTGAAC AACACTTTAA AGAAGAAGAA GCAGGCGAAG CTGAGTGATG AAGTCTTCAT TGTACAGCAA TTTGTTTCTT CTCACATCCT TTTATAAAGT CAAAATTCAG AGTTTGGGTA TGAGGATGGA CTACTCCGCC CTGTAGATTA ACTTACAGGC ATATTACAGT TCTTGGCTCG AATGAACATT ATA |
| Length | 3463 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 9515353.. 9522848 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G19490.1 |
| Description | VPS54 |
| TAIR curator summary | Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system. |
| Alias | [ATVPS54][VPS54][ARABIDOPSIS THALIANA VPS54 HOMOLOG] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg490219 | pre-mRNA splicing factor-related |
| 3.4641 |
Ahg321506 | vacuoleless1 (VCL1) |
| 4 |
Ahg943674 | transducin family protein / WD-40 repeat family protein |
| 5 |
Ahg477260 | CASC3/Barentsz eIF4AIII binding |
| 7.48331 |
Ahg921531 | Protein of unknown function (DUF1664) |
| 8 |
Ahg478859 | ubiquitin-specific protease 25 |
| 8.3666 |
Ahg495894 | cyclic nucleotide gated channel 5 |
| 9.79796 |
Ahg937129 | metalloendopeptidases;zinc ion binding;DNA binding |
| 12.1655 |
Ahg495822 | Pentatricopeptide repeat (PPR) superfamily protein |
| 12.49 |
Ahg495044 | mitotic checkpoint family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|