| Annotation |
|---|
| Description | jgi|Araly1|937778|scaffold_501969.1 |
| Sequence |
GAAAGAGAAA AAAAAACAAA AAACCATGAA GCTTCTTCTT CTTCTTCTCC TCCTCCTCCT CCTCCACATT TCTCATTCCT TCACCGTAGC TAAACCAATC ACCGAGCTCA ACGCTCTTCT CTCACTCAAA TCCTCCCTCA CCATCGACGA ACACTCACCT CTCACCTCAT GGAACCTTTC AACAACCTTC TGTTCATGGA CCGGTGTCAC GTGCGACGTC TCTCGCCGGC ACGTGACCTC TCTCGACCTC TCTGGTCTTA ACCTCTCCGG AACTCTCTCC TCCGACGTAG CTCATTTACC TCTCTTACAG AATCTATCAC TCGCTGCTAA TCAGATCTCA GGTCCTATTC CGCCGGAAAT CTCCAATCTT TACGAGCTTC GTCATCTCAA TCTCTCCAAT AATGGCTTCA ACGGTTCATA TCCCGATGAA CTCTCCTCTG GATTGGTGAA TCTCCGTGTT CTCGATTTGT ATAACAACAA CTTAACCGGA GATTTACCGG TTTCAATCAC TAATCTGACT CAGCTCCGGC ATCTTCACCT CGGTGGGAAT TACTTCTCCG GTAAAATCCC GGCGACGTAC GGAACCTGGC CTGTTCTCGA GTATCTAGCG GTTTCCGGTA ACGAGCTAAT CGGTAAAATC CCTCCGGAGA TCGGAAACCT AACGACTCTT CGTGAACTTT ACATCGGATA TTACAACGCT TTTGAAGATG GTCTTCCACC GGAGATTGGA AATTTGTCGG AGCTTGTTCG GTTCGACGCT GCTAATTGTG GTTTAACCGG TGAGATTCCA CCGGAGATTG GGAAGCTTCA GAAGCTAGAT ACGTTGTTTC TTCAAGTAAA TGCGTTTTCA GGGACATTAA CTTCAGAGCT GGGATTTATC TCAAGCTTGA AATCAATGGA TTTGTCTAAC AATATGTTTA CCGGTGAGAT TCCGGCGAGT TTTTCACAGC TGAAGAACTT AACGTTGTTG AATCTCTTCA GGAACAAGCT ATACGGTGGT ATACCTGAGT TCATCGGTGA AATGCCGGAG CTAGAAGTGT TACAGCTTTG GGAGAACAAT TTCACCGGTG GTATTCCTCA GAAATTGGGG GAAAATGGTA GATTAGTGAT TCTTGACCTC TCTTCAAACA AACTCACCGG CACTTTGCCG CCGAATATGT GCTCCGGTAA CCGGTTAATG ACATTAATCA CTCTCGGTAA CTTCTTGTTT GGTTCAATCC CGGATTCGCT TGGCAAATGT GAGTCTCTGA CCCGGATCCG AATGGGTGAG AATTTTCTCA ACGGGTCGAT TCCAAAGGGG CTTTTCGGGT TACCCAAATT ATCTCAAGTG GAGCTTCAAG ATAATTACCT CACCGGAGAG TTACCGATAA GCGGAGGGGG AGTCTCTGGT GACCTTGGTC AGATTAGTCT GTCTAATAAC CAGCTCTCTG GTCCATTACC TGCTGCTATT GGAAACTTCT CCGGTGTTCA AAAACTACTC CTTGATGGTA ACAAGTTTGC TGGTCCCATT CCACCGGAGA TTGGGAGGCT TCAGCAGCTA TCTAAGTTGG ATTTTAGCCA TAATCTGTTT TCGGGTCGGA TCGCACCGGA GATCAGTCGT TGTAAGCTGC TAACGTTTGT TGATCTGAGT CGTAATGAGC TCTCAGGTGA TATTCCTAAA GAAATCACTG GTATGAGGAT CTTGAATTAC TTGAATCTTT CAAGAAACCA TCTCGTTGGT TCGATACCTG TGACGATAGC ATCAATGCAG AGTTTGACAT CAGTTGATTT CTCTTACAAC AATCTCTCTG GTCTAGTTCC GAGCACTGGA CAGTTTAGTT ACTTCAATTA CACATCGTTT TTGGGTAATT CTGATCTTTG TGGTCCTTAT TTGGGTCCTT GCGGAAAAGG AACTCACCAG CCTCATGTTA AGCCTTTATC TGCTACTACA AAACTGTTAC TCGTCCTCGG ATTGCTCTTT TGTTCGATGG TGTTTGCCAT AGTGGCCATT ACCAAAGCTC GGTCCTTGAG AAATGCGAGT GAAGCCAAGG CATGGAGATT GACTGCTTTC CAGAGACTAG ACTTCACTTG TGACGATGTC TTGGACTCTC TCAAGGAAGA CAACATCATC GGTAAAGGCG GTGCCGGGAT TGTCTACAAA GGCATTATGC CTAACGGCGA TCTAGTCGCG GTCAAGAGAT TGGCTACAAT GTCCCATGGA TCTTCCCATG ATCACGGGTT CAACGCCGAG ATTCAAACGC TAGGTAGAAT CAGACACAGA CACATCGTGA GACTGCTCGG GTTTTGCTCC AACCACGAAA CGAATCTCCT AGTGTACGAG TACATGCCTA ATGGTAGCCT TGGAGAGGTT CTTCATGGAA AGAAAGGAGG TCATTTACAT TGGGACACAC GTTATAAGAT TGCTCTTGAA GCAGCCAAGG GTCTTTGCTA TCTCCACCAC GATTGTTCCC CGTTGATCGT TCATAGAGAT GTTAAATCCA ACAATATCCT CCTCGATTCC AACTTTGAAG CTCATGTCGC CGATTTTGGC CTCGCCAAAT TCCTCCAAGA TTCTGGTACT TCTGAATGTA TGTCCGCCAT CGCCGGCTCT TACGGCTACA TAGCTCCAGA GTACGCGTAT ACATTGAAGG TAGATGAGAA GAGTGATGTG TATAGTTTCG GTGTTGTTCT TCTAGAACTC ATCACCGGGA AAAAACCCGT CGGAGAATTT GGTGACGGCG TTGATATCGT TCAATGGGTT AGAAGCATGA CGGATTCAAA TAAAGATTGT GTGCTCAAAG TAATTGATCT TAGACTCTCT TCTGTACCAG TTCACGAAGT AACACACGTC TTCTACGTTG CGTTGCTCTG CGTTGAAGAA CAAGCGGTGG AGAGGCCGAC GATGCGTGAA GTCGTTCAGA TTCTCACTGA GATCCCAAAG ATCCCTCTTT CGAAGCAGCA GGCGGCGGAA TCAGACGTGT CGGAGAAAGC TCCGGCGATT AATGAATCGT CGCCAGATTC AGGAAGTCCA CCGGATCTTT TAAGTAATTA GACTTTCCGG CAATTGGGTT T |
| Length | 3051 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 13897143.. 13900280 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G49670.1 |
| Description | Leucine-rich receptor-like protein kinase family protein |
| TAIR curator summary | Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. |
| Alias | [BAM2][BARELY ANY MERISTEM 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.68115 |
Ahg915153 | Auxin-responsive family protein |
| 8.94427 |
Ahg475717 | transmembrane kinase 1 |
| 9.38083 |
Ahg480276 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| 10.9545 |
Ahg485285 | IQ-domain 21 |
| 11.0454 |
Ahg496474 | Xanthine/uracil permease family protein |
| 15.8745 |
Ahg487977 | Protein of unknown function, DUF642 |
| 16.4317 |
Ahg938360 | Eukaryotic aspartyl protease family protein |
| 19.1311 |
Ahg904619 | Pollen Ole e 1 allergen and extensin family protein |
| 19.8242 |
Ahg476393 | germin-like protein 1 |
| 20.9762 |
Ahg483684 | FASCICLIN-like arabinogalactan protein 8 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|