| Annotation |
|---|
| Description | jgi|Araly1|938705|scaffold_502896.1 |
| Sequence |
TGTCATTCTC TTCTGTCTCT CATGGATCCT TCAAGACGAC CACCGAAGGA CTCTCCTTAC GCGAATCTCT TCGATCTCGA GCCGTTGATG AAGTTCAGAA TTCCGAAACC TGAAGATGAA GTTGATTATT ATGGGAGTAG TAGCCAGGAT GAAAGTAGAA GCACTCAAGG TGGGGTAGTG GCAAACTACA GCAATGGGTC TAAATCGAGA ATGAATGTGA ACTCCAAGAA GAGAAAGCGG TGGACAGAAG CTGATGATGC AGAGGATGAT GATGACCTCT ACAATCAACA TGTTACTGAG GAGCACTACC GATCAATGCT TGGGGAGCAT GTACAAAAAT TCAAAACTAG GTCCAAGGAG TCTCAAGGGA ATCCTCCACA TCTGATGGGT GTTCCGGTGC TAAAGAGCAA TGTGGGCAGT TACAGAGGTA GGAAACCAGT GAATGATCAC TATGGGAGAT TCTATGATAT GGACAGCTCT CCAAATTTTG CTGCTGATGT GATCCCACAT AGGCGAGGAA GCTACCATGA TCGTGATATT ACCCCCAAAA TAGCATATGA ACCTTCGTAT TTGGACATTG GTGATGGTGT CATCTACAAA ATCCCCCCAA GCTATGACAA GCTGGTGGCA TCATTAAACT TACCAAGCTT TTCAGATATT CATGTGGAAG AATTTTACTT GAAAGGAGCT CTGGATCTGA GATCATTAGC AGAACTGATG GCTAGTGATA AAAGGTCTGG AGTAAGAAGC CGTAATGGAA TGGGTGAGCC TCGACCTCAA TATGAATCTC TTCAAGCTAG AATGAAGGCC CTGTCACCTT CAAACTCCAC CCTAAATTTT AGCCTCAAGG TGTCAGAAGC TGCAATGAAT TCTGCCATTC CAGAAGGATC TGCTGGAAGT ACTGCACGAA CAATTCTGTC TGAGGGTGGT GTTTTACAGG TCCATTACGT GAAGGTTCTG GAGAAGGGGG ATACATACGA GATTGTTAGA CGAAGTCTAC CGAAGAAGCT GAAAGCGAAG AATGATCCTG CAGTCATTGA GAAAACAGAA AGGGATAAAA TTAGAAAAGC CTGGATCAAT ATAGTCAGAA GAGATATAGC AAAACACCAT AAAATTTTCA CTACTTTCCA TCGAAAACTA TCAATTGATG CCAAGAGGTT TGCAGATGGT TGCCAAAGAG AGGTGCGAAT GAAGGTGGGT AGATCATACA AAATCCCAAG GACTGCACCG ATTCGCACTA GGAAGATATC CAGAGACATG CTGCTATTCT GGAAGCGACA TGACAAGCAG ATGGCAGAAG AGAGGAAAAA GCAAGAAAAG GAAGCTGCAG AGGCTTTTAA ACGTGAACAG GAGCTTCGAG AGGCAAAAAG GCAGCAACAA AGGCTCAATT TTCTTATTAA ACAGACTGAG CTTTACAGTC ACTTCATGCA AAACAAGACC GATTCAAATC CTTCCGAAGC CTTACCAATA GGTGATGAAA ATCCGATTGA CGAAGTGCTC CCAGAAACTT CAGCAGCAGG ACCTTCTGAG GTGGAGGATC CTGAAGAGGC TGAACTGAAG GAAAAGGTCC TGAGAGCTGC CCAAGATGCG GTGTCTAAGC AGAAGCAAAT AACAGATGCA TTTGACACTG AATATATGAA GCTACGCCAA ACTTCTGAAA TGGAAGGTCC TTTGAATGAT ATATCAGTTT CTGGCTCGAG CAATATAGAT TTGCATAACC CATCTACAAT GCCTGTTACA TCAACAGTTC AGACTCCAGA GTTATTTAAA GGAACCCTTA AAGAATACCA AATGAAAGGC CTTCAGTGGC TAGTCAATTG TTATGAGCAG GGTTTGAATG GCATACTTGC TGATGAAATG GGCTTGGGTA AGACTATTCA AGCTATGGCT TTCTTGGCAC ATTTGGCTGA GGAAAAGAAC ATTTGGGGTC CATTTCTGGT TGTTGCCCCT GCCTCTGTTC TTAACAATTG GGCTGATGAA ATCAGTCGTT TCTGTCCTGA TTTGAAAACT CTTCCATATT GGGGAGGATT GCAAGAACGA ACAATTTTAA GAAAGAATAT CAATCCCAAG CGTATGTACC GAAGGGATGC TGGCTTTCAT ATTTTGATTA CTAGCTATCA GCTATTAGTC ACCGATGAAA AGTATTTTCG CCGGGTGAAG TGGCAATACA TGGTGCTAGA TGAGGCCCAA GCAATCAAGA GTTCTGCCAG TATAAGATGG AAAACCCTTC TTAGTTTTAA CTGTCGGAAC CGATTGCTTC TGACTGGTAC TCCAATTCAG AACAACATGG CAGAGTTATG GGCCCTGCTG CATTTCATCA TGCCAATGTT GTTTGACAAC CATGATCAAT TTAATGAGTG GTTCTCAAAA GGAATTGAGA ATCATGCTGA ACACGGAGGC ACTTTAAATG AGCACCAGCT TAACAGACTG CATGCGATTT TGAAACCGTT CATGCTTCGA CGGGTAAAGA AGGATGTGGT TTCTGAGCTA ACTACAAAGA CGGAAGTTAC AGTACACTGC AAGCTCAGTT CGCGACAACA AGCTTTTTAT CAGGCTATTA AGAACAAAAT TTCTCTGGCT GAGTTGTTTG ATAGCAACCG CGGACAATTT ACTGATAAGA AAGTACTGAA TTTAATGAAT ATTGTCATTC AACTTAGGAA GGTTTGCAAC CATCCAGAGT TGTTCGAAAG GAATGAAGGG AGCTCGTATC TCTACTTTGG AGTAACTTCC AATTCTCTTT TACCCCATCC CTTTGGTGAG CTAGAGGATG TACATTATTC TGGTGGTCAA AATCCGATAA TATACAAGAT GCCTAAACTA CTACACCAAG AGGTCCTCCA AAATTCTGAA ACATTTTGTT CTTCCGTCGG GCGTGGCATC TCAAGAGAAT CCTTTCTGAA GCATTTTAAT ATATATTCAC CTGAGTATAT TCTTAGGTCA ATATTCCCAT CTGATAGTGG GGTAGATCAA ATGGTTAGTG AAAGTGGAGC ATTTGGCTTT TCACGCTTGA TGGATCTATC ACCGGTAGAA GTTGGATATC TGGCGCTGTG TTCTGTTGCA GAAAGGCTAT TATTCTCTAT ACTGAGATGG GAGCGGCAAT TTTTGGATGA ATTAGTGAAC TCTCTTATGG AATCCAAGGA TGATGATCTT AGTGACAATA ACATCGAGAG AGTTAAAACC AAAGCTGTCA CAAGAATGTT ACTGATGCCA TCAAAAGTTG AAACGAATTT TCAGAAAAGG AGACTAAGCA CAGGGCCTAC CCGTCCTTCA TTTGAAGCGC TAGTGATCTC TCATCAGGAT AGGCTTCTTT CAAATATCAA ACTCCTGCAT TCTGCATATA CTTATATCCC AAAAGCCAGA GCTCCACCGG TAAGCATTCA TTGCTCGGAC AGAAATTCTG CATACAGAGT TACAGAAGAA TTACATCAAC CATGGCTCAA GAGACTATTA ATCGGTTTTG CACGTACATC AGAAGCTAAC GGACCCAGGA AGCCGAACAG CTTTCCACAT CCTTTAATCC AAGAAATTGA TTCAGAACTT CCACTTGTGC AGCCTGCGCT ACAACTGACA CACAGAATAT TTGGTTCTTG CCCTCCAATG CAAAGTTTCG ACCCAGCAAA GTTGCTCACG GACTCTGGGA AGCTGCAGAC ACTTGATATA TTATTGAAGC GGCTTCGAGC TGGAAATCAC AGGGTGCTCC TCTTTGCACA AATGACAAAG ATGCTGAACA TTCTTGAGGA TTACATGAAC TATAGAAAGT ACAAGTACCT CAGGCTTGAT GGATCCTCCA CCATCATGGA TCGCCGAGAT ATGGTTAGGG ATTTTCAGCA TAGGAGCGAT ATTTTTGTAT TCTTGCTGAG CACGAGAGCT GGAGGACTTG GTATCAACTT GACGGCTGCA GACACTGTCA TTTTCTATGA AAGTGATTGG AATCCCACCT TGGATTTACA AGCTATGGAC AGAGCTCATC GTCTTGGACA GACAAAAGAT GTTACTGTGT ATCGGCTCAT CTGCAAGGAG ACGGTGGAAG AGAAAATTTT GCACAGGGCA AGTCAGAAAA ATACAGTTCA ACAGCTTGTT ATGACTGGAG GGCATGTTCA GGGTGATGAT TTTCTTGGAA CTGCGGATGT GGTATCGCTG CTAATGGATG ATGCAGAGGC AGCACAACTG GAGCAGAAAT TCAGAGAACT ACCATTACAG GTAAAGGACA GGCAGAAGAA AAGGACGAAA TGTATCAGAA TAGATGCTGA AGGAGATGCA ACTTTGGAAG AGTTAGAAGA TACTGAACGA CAAGATAACG GACAGGAACC TTTGGAAGAA CCGGAAAAGA CAAAACCCAG TAACAAAAAG AGGAGAGCTG CTTCAACTCC GAAATCTAGA GCTCCTCAGA AAGCAAAGGA AGAAGCAAAT GGTGAAGATA CTCCTCAAAG GACAAAAAGG GTAAAGAGAC AAACAAAGAG CATAAACGAG AGTCTTGAAC CTGTCTTCTC TGCCTCTGTT ACAGAAACAA ATAGAGGATT CGATCCAAGT AGCTCCGCCA ACTAATCTGA AGATGATTAG AGCTT |
| Length | 4565 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 17331162.. 17338946 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G57300.2 |
| Description | INO80 ortholog |
| TAIR curator summary | Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. |
| Alias | [ATINO80][INO80][INO80 ORTHOLOG][INO80 ortholog] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.74456 |
Ahg921800 | Nucleotide-diphospho-sugar transferases superfamily protein |
| 7.87401 |
Ahg489487 | Protein of unknown function (DUF300) |
| 9 |
Ahg932069 | Coatomer, alpha subunit |
| 9.16515 |
Ahg478500 | LETM1-like protein |
| 12 |
Ahg935153 | multiprotein bridging factor 1A |
| 21.2603 |
Ahg483691 | WD-40 repeat family protein / beige-related |
| 21.6795 |
Ahg327182 | KH domain-containing protein |
| 21.9089 |
Ahg944826 | |
| 22.4499 |
Ahg952051 | |
| 26.4953 |
Ahg328661 | Class I glutamine amidotransferase-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|