| Annotation |
|---|
| Description | jgi|Araly1|939998|scaffold_600542.1 |
| Sequence |
TCTTCATCAT CAATCTTCTT CAATGGCCTT CACCGCCTTT CTCCTCCTCC TCTCTTCCAT CGCCGCCGGT TTCCTCCTCC TCCTCCGCCG TACACGTTAC CGTCGGATGG GTCTTCCTCC GGGAAGCCTC GGTCTTCCCC TGATAGGAGA GACTTTTCAG CTGATCGGAG CTTACAAAAC AGAGAACCCT GAGCCTTTCA TCGACGAGAG GGTGGCCCGG TACGGTTCGG TTTTCATGAC GCATCTATTT GGTGAACCGA CGGTTTTCTC AGCTGACCCG GAGACGAACC GGTTTGTTCT TCAGAACGAA GGGAAGCTTT TCGAGTGTTC TTATCCTGCT TCCATTTGTA ATCTTTTGGG GAAACACTCT TTGCTTCTTA TGAAAGGTTC TTTGCATAAA CGTATGCACT CTCTTACCAT GAGCTTTGCT AATTCTTCAA TCATCAAAGA CCATCTCATG CTTGATATTG ACCGGTTAGT CCGGTTTAAT CTTGATTCTT GGTCTTCTCG GGTTCTCCTC ATGGAAGAAG CCAAAAAGAT AACGTTTGAG CTAACGGTGA AGCAGTTGAT GAGCTTTGAT CCAGGGGAAT GGAGTGAGAG TTTAAGGAAA GAGTATCTTC TTGTCATCGA AGGCTTCTTC TCTCTTCCTC TCCCTCTCTT CTCCACCACT TACCGCAAAG CCATCCAAGC GCGGAGGAAG GTGGCGGAGG CGTTGACGGT GGTGGTGATG AAGAGGAGGG ACGAGGAGGA AGAAGGAGCG GAGAGAAAAA AAGATATGCT TGCGGCGTTG CTTGCCGCGG ATGATGGATT TTCCGATGAA GAGATTGTTG ATTTCTTGGT GGCTTTACTC GTCGCCGGTT ATGAAACAAC CTCCACAATC ATGACTCTCG CCGTTAAATT TCTCACCGAG ACTCCTTTAG CTCTTGCTCA ACTCAAGGAA GAGCATGAAA AGATTAGGGC AATGAAGAGT GATTCATATA GTCTTGAATG GAGTGATTAC AAGTCAATGC CATTCACACA ATGTGTGGTT AACGAGACGC TGCGAGTGGC TAACATCATC GGCGGTGTTT TCAGACGGGC AATGACGGAT GTTGAGATCA AAGGTTATAA GATTCCAAAA GGGTGGAAAG TATTCTCATC GTTTAGAGCG GTTCATTTAG ACCCAAACCA CTTCAAAGAT GCTCGCACTT TCAACCCTTG GAGATGGCAG AGCAACTCGG TAACAACAAG CCCTTCTAAT GTGTTCACAC CGTTTGGTGG AGGGCCAAGG CTATGTCCCG GTTACGAGCT GGCTAGGGTT GCACTCTCTG TTTTCCTTCA CCGCCTAGTG ACTGGCTTCA GTTGGGTTCC TGCAGAGCAA GACAAGCTGG TTTTCTTTCC AACTACAAGA ACGCAGAAAC GGTACCCGAT CTTCGTGAAG CGCCGTGATG TTGCTACTTG AAGAAGAAGA GATCAGCTTA TTT |
| Length | 1463 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 2005473.. 2009261 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G05690.1 |
| Description | Cytochrome P450 superfamily protein |
| TAIR curator summary | Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses. |
| Alias | [CBB3][CPD][CYP90][CYP90A][CYP90A1][DWF3][CABBAGE 3][CONSTITUTIVE PHOTOMORPHOGENIC DWARF][CYTOCHROME P450 90A1][DWARF 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 12.4097 |
Ahg495838 | Fibronectin type III domain-containing protein |
| 12.8452 |
Ahg483725 | AT hook motif DNA-binding family protein |
| 14.8997 |
Ahg484136 | low-molecular-weight cysteine-rich 68 |
| 15.4272 |
Ahg492022 | Eukaryotic release factor 1 (eRF1) family protein |
| 17.4356 |
Ahg489219 | Transmembrane CLPTM1 family protein |
| 20.6398 |
Ahg905237 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| 27.7669 |
Ahg478403 | DNA GYRASE A |
| 28.775 |
Ahg491679 | FAD/NAD(P)-binding oxidoreductase family protein |
| 29.1033 |
Ahg495469 | Serine/threonine-protein kinase WNK (With No Lysine)-related |
| 29.2233 |
Ahg470445 | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|