Detail


ID : Ahg491679

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|491679|fgenesh2_kg.7__1112__AT4G30720.1
Sequence
CACAGAGACA AGCTTTTTAG TTTGAGCTCT CACTATGTCT CTCTCGCAAA CGAATTTCCT CAGTTCTTCA TTTCTCTCAT CGAGCCATGA CCTGCGAATT CCTTATTCTA GAGAGGTACT CTCTTATCCC CGTATCCAAA CACACCGGAT TCTCTGTGCT GCCAAGCGAA CCGGGAAGCG GAGATATCCT TCTGAGAGGA GGAAGCTGAG GACAGAGCAG AAGGAAGCTG TGGCCAAGGT TAAGAACAAG CTCGAAGGAG TATGGCGTCT CTCTAAGCTC GGAGTTCCTG TTGGAGATGA CCCTGGAAAG GATTTTCTCG GAATTTCCGA AGGTTTGCTT CAAGCCATCG CTAAAGTTAT TGAGTTTCCG GTTGCTTCAA TGCTGCCAGA AGAAGCATTT TCAGTGATTA GGAAATCTTT TGACGCTAGG AAGATTCTGA AAGAAGCCAA GTTTGTGTAT ACTGTGGATT TGGATGTGAA GACGCTTCTT GAGTTGGAGC CTCGTGCTCA TGATTTCATT TTCCGGTTAG AGCCTGAGAT TGGGCTTATT GAACATGTGC CTACCGAGAA GAGTGTTTCA GGGGACTTGA TCAGTGTGGT GAACGACTGT AAAAGGATCA ACAGTGAGAC ATCATCCGGA GAACATGAAC CTCAGATTAT CAATGGCTCT GGAGATCCAC ACCAGCGTGG AGGACGAAGC AAACCGAAAA TCGCAGTTGT TGGTGGTGGT CCATCTGGTT TGTTTGCAGC TCTTGTTCTT GCAGAGTTCG GTGCAGATGT GACATTGATA GAAAGAGGGC AAGCAGTAGA AGAAAGGGGA CGTGATATCG GCGCTTTGGT AGTTCGCAAG ATTTTGGATA TGGAGAGTAA TTTCTGCTTT GGCGAGGGTG GTGCAGGTAC TTGGAGTGAT GGAAAGCTTG TTACTCGAAT AGGAAAGAAT AGTGCCACCG TTTTAGCGGT GTTGAAAACG TTGGTTCGCT TTGGTGCTCC TGATAATATA TTGGTCAACG GAAAGCCTCA TCTAGGAACA GATAAGCTAG TTCCATTACT CCGTAATTTC AGACATTATC TTCAAAGTGC GGGAGTGACT ATCAAGTTTG GAACTCGGGT AGATGATCTT CTGGTAGAGG ATTCTCGTGT TGTTGGAGTC AGGGTTTCGG ATTCAACAGA CCAATTGCAG AGTACTTCCC AGAATTTAAA GTTTGATGCA GTTGTTCTTG CGGTTGGTCA CTCAGCACGT GACACATATG AGATGCTTTA TTCTCGTAAT GTTGAATTGA CCCCAAAAGA TTTTGCTGTT GGTTTGCGCA TTGAGCATCC TCAGGAGCTA ATTAACAGTA TACAGTACTC GGATTTGGCA AGTGAAGTTC TTAAAGGACG AGGTAAAGTA CCAGTGGCGG ATTATAAGGT TGTTCAGTAT GTGAATGATA AGGCCGAGGA TCTCTCGCAG TCTTCATCAA AACGTAGTTG CTACTCCTTC TGCATGTGTC CTGGTGGTCA GGTTGTTCTC ACCAGCACAA ACCCAACCGA ACTCTGCATC AATGGCATGT CATTTTCTCG CCGTTCTTCC AAATGGGCCA ATGCTGCACT CGTCGTCACA GTATCAGCAA AAGACTTTGA TGTTCTCAAT CTTAAAGGAC CCTTAGCTGG AATTGAGTTT CAGAGAGAGT TTGAAAGAAG AGCGGCTATA ATGGGTGGTG GCGATTTTAC AGTTCCTGTA CAAAGGGTTA CTGATTTTCT GCAAAACAAG CTATCTGAAA CACCTTTACC TCCATCAAGC TATAGATTAG GAGTGAAGTC TGCAAATCTG CATGAACTGT TTCCTACTCA TATTACAGAG TCTCTGCGAC AGTCTATCTC TATGTTTGAA AAAGAGTTGC CAGGATTCAT CTCAGAGGAA GCACTCCTCC ATGGCGTAGA GACAAGAACA AGCTCCCCTG TTCGGATACC TCGAAGCAAT GAGACGTACG AGAGCACGAG CTTAAAAGGT CTATACCCAG TTGGTGAAGG AGCTGGTTAT GCTGGTGGCA TTGTAAGTGC TGCAGTGGAT GGTATGTTTT CGGGTTTTGC TGTTGCGAAA AGCTTTGATC TCTTTGATGG AACCATAGAG TCAGTTATTG GAAAGGCTCA AGGTGCTGGA CTTGTGAAGT ACTGATGATG ATGATGATTG TTGAGGTAAA AGAACATCAA TGGGGACTGC TTCCTCCAGA ATTCAGTTTT GTTGTACCAA AGCTTAAGAA CCTATACAGA AAAAGGCTCA ATCAGAAGCG GGAACCATCA GCAGCCAGAA GAGAATTTTG CCTTAGTTAT GTAACTAACC CAAACAGTAG TAGTTAAGAA AGTAA
Length2345
Protein Sequence
Protein Residue
Map Locationscaffold_7: 4363376.. 4366896
Download Sequence
A.thaliana
AGI-codeAT4G30720.1
DescriptionFAD/NAD(P)-binding oxidoreductase family protein
TAIR curator summaryEncodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth.
Alias[PDE327][PIGMENT DEFECTIVE 327]
Gene coexpression
MR
MR Locus Description
3.74166 Ahg936442 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
5.2915 Ahg496600 glutamate tRNA synthetase
6.16441 Ahg938054 Mitochondrial substrate carrier family protein
8 Ahg487703 P-loop containing nucleoside triphosphate hydrolases superfamily protein
9.38083 Ahg893370 peptide deformylase 1B
10.9545 Ahg490868 Ribonuclease III family protein
11.1355 Ahg489192 Fe superoxide dismutase 3
13.6748 Ahg477686 plastid transcriptionally active 3
13.7477 Ahg944081 Ribonuclease III family protein
13.784 Ahg470910 chloroplastic NIFS-like cysteine desulfurase
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression