| Annotation |
|---|
| Description | jgi|Araly1|487067|fgenesh2_kg.6__201__AT5G02880.1 |
| Sequence |
TAAATTTTCC AAAGATAAAA CCCTAGATTC TCATCTTCTT TTCTTCAATC TCTCTGAGAA TTTTTAGGTT TTCGTTACCA ATCTAACGAT TGGGTCAATC TGGTGAAACT TTAAGGTTGA GATCAGATAA TTTAATTGGA AGACTTAAGT TATGGAGAAC AGAGGCCAGA AACGAATGGA GGTTGTGGAA GAGTTACCTG CTGATAAGAG AGCTTGTAAC TCGCAGGATT TTAGGCCAAG CACATCTGGA TCATCTGTTC AAGCTCAAGC TAATGGGACG AGTTCAGGAC AAGAAAATGT TGACGCTGAT ATGGATACTT CTTCATCTGC TTCGCCTTCG AGTCGATCAG AGGAAGAACA GGATAAGGAT TCGGACTATG GATCTTGCGA TTCTGATGAG GAAGATCCCA GACAGAGGGT GCTTCAGGAT TACCAGAGGC AGAGATCATC TGGTGATCAA GGGAAATTGA AGTCTCTCTT GTCGAGTTTG ACTGGAGAAA CCGATCCTTC AGGGCAGTTA TCCGGGCTTA CTGAGTTATG TGAAGTGTTG TCATTTTGTA CTGAAGAATC GCTGTCCAGC GTTATGGCCG ACATGCTATC ACCGGTGCTT GTAAAGTTAT CTAAGCATGA GAACAATGCA GATATTATGC TCCTTGCAAT TAGAGCAATT ACTTACTTGT GTGATGTTTA TCCCCGGTCA GTAGCATCCC TTGTAAGACA TGATACTATT CCTGCTCTCT GCCAAAGACT TTTGACTATT GAGTACTTGG ACGTTGCTGA GCAATGTTTG CAAGCACTTG AAAAAATATC CCGAGATGAG CCGGTAGCCT GCTTGAATGC TGGAGCAATT ATGGCAGTGC TTTCGTTTAT TGATTTCTTC TCAACAAGCA TTCAGAGAGT CGCAATTTCT ACTGTGGTCA ATATATGTAG GAAGCTTCCT TCTGAGCCTG CCTCGCCTTT CATGGATGCT GTTCCAATTT TATGCAATCT TCTTCAGTAT GAAGATCGAC AGCTGGTTGA GAATGTGGCT ATTTGCCTGA CAAAAATAGC AGATCAAGTT AGCGAGTCAC CGGCAATGTT GGATCAACTG TGTAGGCATG GACTAATTAA TCAATCAACA CATCTCTTAA ACTTGAATAG CCGCACTACC CTATCTCAAC CTGTCTACAA TGGTGTGATT GGACTGCTAA GAAAACTTTC TTCTGGTTCG ACTTTAGCTT TCAGAACGTT ATATGAGCTT AACATTGGCT ATAGATTAAA AGAAATCATG TCCATGTATG ACATTTCTCA TTCAATGTCG TCTACACATC CTATCAATGC ATGTTCTAAT CAGGTGCATG AAGTCTTGAA GTTAGTAATT GAGCTTCTTC CAGCTTCACC CGTAGAGGAT AATCAGCTGG CATTGGAAAA GGAAAGTTTT CTTGTCAATC AGCCTGATCT TTTGAAACAA TTTGGAACAG ACATGCTTCC TGTTATGATT CAGGTGCTAA ACTCTGGAGC TAACGTATAT GTTTCTTATG GTTGCCTATC AGCAATTCAC AAGCTGATTT GCTTGACTAA GTCAGGTGAT CTTGTCGAAT TACTGAAGAA CGCCAACATG TCAAGTGTTT TGGCTGGTAT TTTGTCAAGA AAGGATCATC ATGTGGTTGT AGTAGCACTA CAGGTTGCGG AAGTGCTTCT TGAGAAATAC AGAGATGCAT TTTTGAATTC CTTTATAAAG GAAGGTGTTT TTTTCGCAAT TGAAGCACTC TCAAATTCTG ATAGAGGGCA ACAAAATCCA GTATCTGGTA TCATTCAGGG ATCAGCTGAC CTTTCACAAA AGCCTGTTAC AAAAGAGATT GTGAAATGCC TGTGCCAATC TTTTGAAAGA TCGCTATCCT CTGCTTCACA AACTTGTAAG ATTGAAAATG ATTCTGTCTA CATTCTTGCA ACACGTATCA AGGAGAGTTT CTTTGGACCT GAGGTATTCA ACTCTGAGAA AGGCTTGACA GATGTCCTCC AAAACCTCAA GAACTTGTCA GTAGCACTGA GCGATTTGAT GACTGTACCC ATTGATGCAC ATGTCCTGCA TGATGAGAAA TTCTTCTCAA TATGGAACCA AATCATGGAA AGGCTGAATG GAAGGGAATC TGTGTCTACT TTTGAATTTA CAGAGAGTGG AGTTGTAAAG TCACTGGCAA ACTATCTTTC TAATGGACTC TATCAAAGGA AACTTAGCAA AGGGGATCCC GAATGTGATA GTTTACCATT TGTTGGTAAG AGATTTGAGG TGTTCACAAG ATTACTTTGG TCTGATGGCG AGGCAACTTC ATCATTGTTA ATACAGAAGC TCCAAAATTC CTTGTCTTCT TTGGAAAACT TCCCAATTGT CCTAAGCCAA TTTTTGAAGC AAAAGAACTC ATTTGCGGCT ATTCCAAATG GGCGTTGCAC TAGTTATCCA TGCCTAAAAG TTCGTTTTCT GAAAGCAGAG GGGGAGACAT CTTTGCGTGA TTACTCCCAA GACTTTGTCA CTGTTGACCC ACTTTGCTAT TTGGATGCTG TCAATCAATA CTTGTGGCCT AAAGTTAATA TAGAACCTAT GGATTCTGTG GAAGCAAAAG ATCAAGCTAT AGAATGCCAA TCTTCTCAAT TGCAGTCAAC TTCGATATCT TGTCAAGGTG AAAGCTCGAG TCCTATGGAG ATTGACAGTG AGTCTTCTGA TGCGTCTCAG TTGCAGGGAT CTCAAGTGGA AGATCGGACG CAGCTTCCAG GACTATGTAG TGGTTCAGGA CAACAGAATG CTTCCTCCTC TGGAACCTCT TCTGAAAAAG AGGATGCGCT ACCTAGTCTT TTGTTTCGTC TTGAAGGGCT TGAACTAGAC CGTTCTTTGA CAGTATATCA GGCAATTCTC TTGCACAAAC TAAAATCAGA AAGTGAAACT ACCAACGGTT TGAAGCTGAG TGGACCCCAC AACATCACAT ATGAAAGGGC TGCACAACTT GGGGATTTTC ATAAAAATCT GTTTCCACCC GGATCTATGG AAGATGATGA GTATCGCCCG TTCTTATCCT ATTTGTTTGC TCATCAACTT GCTTTGCGCC TCAAGGGGTC AAGTCCTCCT GCATATGACA TATTGTTTCT GCTTAAGAGT CTGGAGAGCA TGAACAGATT TCTCTTTCAC CTGATTTCTC TTGAAAGGGT TAATGCTTTC GGTGAAGGTA GGCTGGAGAA TTTGGATGAT CTGAGGGTAC AAGTTCGTCC TGTGCCACAT TCTGAATTTG TTAGCAGCAA GCTTACAGAG AAGTTAGAGC AGCAGCTTCG TGATTCTTTT GCTGTGTCAA CCTGCGGTCT GCCACCATGG TTTAATGATC TAATGGATTC ATGTCCGTTT TTGTTTAGTT TTGAAGTTAA ATCTAAATAC TTCAGACTTG CAGCCTTTGG TTCACAGAAG GTCCATCATC ATCCACAGCA CCTTAGCAGT TCAAATGTTC AGGGCGAAGG GCGCCCAGTA ACTGGTAGTT TACCTCGTAA AAAATTCTTA GTTTGCCGTG AAAAAATTCT AGAGTCTGCT GCCAAAATGA TGGAGTTATA TGGCAACCAG AAGGTGGTCA TTGAGGTTGA ATACAGTGAA GAAGTCGGAA CTGGTCTTGG GCCAACACTG GAGATCTATA CACTTGTCAG TAGAGCATTT CAAAATCCTG ATCTTGGTAT GTGGAGGAAT GATTGTAGTT CCTTTGTTGG GAAGCCAGGT GAACACTCGG GAGTTTTGGC ATCTTCTTCA GGACTCTTTC CACGACCTTG GTCAGGTACA TCAACTACTT CAGATGTGCT GCAGAAATTT GTCCTTTTGG GGACAGTGGT AGCAAAGGCT TTACAAGATG GTCGAGTCTT AGACCTTCCT TTTTCCAAAG CCTTCTATAA ACTAATTCTC GGACAGGAGC TGAGTTCATT TGACATCCAC TTCGTTGACC CTGAACTTTG TAAAACAATG GTGGAATTGC AAGCTCTGGC ACGTAGGAAA AAGGTTTTCA CTGAAGCACA TGGTGATTCC CGACCAGCCA AGTGTGATTT AAGTTTCCAT GGAACAAAGA TTGAGGACCT TTCTCTTGGA TTTGCATTAC CTGGCTACAC AGACTATGAT CTTGCTCCCT ATTCTGATAA TGATATGGTA AATTTGGATA ACCTCGAGGA ATATATCAAG GCTATTATCA ATGCCACAGT ATGTAATGGT ATCCAAAAAC AAGTGGAAGC ATTTCAGTCT GGATTTAATC AGGTTTTCCC TATTGAACAT CTTCGGATAT TCAATGAAGA GGAGCTGGAA ACTATGTTGT GTGGAGAACG CGATCTCTTT AATATGAATG AAGTCTTGGA TCACATCAAG TTTGATCATG GATATACTTC TAGCAGCCCA CCGGTTGAAA ATTTGTTGGA GATTCTGCAT GAGTTTGACA GGGAGCAACA ACGAGCGTTT CTGCAATTTG TAACAGGATC TCCTCGGCTA CCTCATGGTG GTTTGGCGTC TCTCAATCCC AAACTAACAA TTGTCCGCAA GCATGGTAGC GATTCTTCAG ATACTGACCT CCCTAGTGTG ATGACATGCG CCAATTATCT GAAGCTTCCT GCTTATTCAT CCAAAGAGAA GATGAAGGAG AAGCTGATTT ATGCCATAAC TGAAGGTCAA GGTTCCTTCC ATCTCTCTTA AGTTTAGGTT CTTGTATAAA GTTAGCAGAA GCGGTAGGAG GAAGAGAAGA GTGGATTGTT AGAAGAGACA AGAGGAAGCT CTTCCTTCTT CTTTTTAACA TGGCTTTTTA AAGTTTTCTT CTTTTTAGGA TTTTGTACAA AAGAATAGTA ATAAGTAAAC GTAGGAAAAA AAGAAACTCT CTTTTGAAGT GATGGAAAAA GTTGTATATA AAGAAATTCC TAAACTGGTT TTAATATTAT TGTATAAAT |
| Length | 4929 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 757458.. 764571 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G02880.1 |
| Description | ubiquitin-protein ligase 4 |
| TAIR curator summary | encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. |
| Alias | [UPL4][ubiquitin-protein ligase 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg470463 | Ankyrin repeat family protein |
| 7.14143 |
Ahg493254 | LSD1-like 3 |
| 7.48331 |
Ahg470058 | GRAM domain family protein |
| 7.48331 |
Ahg481669 | SIT4 phosphatase-associated family protein |
| 7.54983 |
Ahg470307 | |
| 8.48528 |
Ahg941041 | PHD finger family protein |
| 9.48683 |
Ahg470281 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 9.94987 |
Ahg950187 | DNA topoisomerase 1 beta |
| 12.2474 |
Ahg496629 | splicing factor, putative |
| 12.6095 |
Ahg474065 | actin 8 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|