| Annotation |
|---|
| Description | jgi|Araly1|941120|scaffold_601664.1 |
| Sequence |
TTTGGTCTAG AGGACGAGGA ATGTTTTATT CGCAGTTTAT ATTAGCTAAG AAAGGGCCAC TTGGGACAAT ATGGATTGCT GCCCATTTGG AGAGGAAGCT TCGAAAGAAT CAGGTCGCTG ATACTGATAT TGGAGTCTCC GTTGATTCTA TTCTCTTTCC GGAAGCTCCT ATTGCATTGC GATTGTCTAG TCATCTTCTG CTCGGTGTTG TGCGTATATA TTCGAGAAAG GTGAATTACC TCTTTGATGA TTGCAGTGAG GCATTGCTTA AGGTAAAGCA AGCTTTTCGC TCTGCTGCTG TTGACCTACC CCCTGAAGAA TCTACAGCGC CATATCACTC AATTACGTTG CCTGAGACAT TTGATCTTGA TGACTTTGAG CTTCCAGACA ATGAGATCTT TCAGGGTAAT TACGTCGATC ATCATGTTAG TACAAGAGAG CAGATCACCC TTCAGGATAC CATGGATGGT GTTGTATACT CAACGTCACA ATTTGGATTA GATGAGCGAT TTGGTGATGG CGACACTTCT CAAGCTGCTT TGGATCTTGA TGAGGCAGTA TTCCAGGATA AGGATGTTAT TGGATCCGAC GATGAGGGAG TTCCAGGTAA TGATCACAAT GCGTATCTGG ATGCGGCAAC ACCCGGGATA AAGGATTCGA TGGAAGGAGT CTCTGAAGCC ATGCCCAGGG ATTTTAATGA AGAGCAGGTT GAAGATCTTG CTATGAATAA TGAGTTCATC GAAGATGCTC AAGCTCCTCA AACTCCTGGA TTAGTTGAGG TGCCAAACTC GTCTAGTGTC AGAGAGCAGC TGGCATGCGA TGATCACATG GAGGTAGAGG ATTTGAATGC AGAAGAAGGT AAAAAAGCCT CTGGGGAGCT GGGTGCTAAT GAGATGCATA AACGTGGGGA AGACCTATCT TCTGAATATA ATGCCCCAGA ATCAGCAGTT ACTCCTGTGG AGGTAGATAA GTCACAGATG GATAAAAATG TCAACACACA AAATGAGCCA GAGGAGGAGA GGGCAGAGCA TGTACATGTT ACATCTCCAT GTTGTTCTCA CATCACCACC GAGATGGAGG ATCCTGGTCA AGTAATGACT GAGGCAGGAA CTAATGTTAA TAATGTTGTA ACTGATAAGT CCGATGCTGT TCCTCCACTT GAATCTTCTG GAGAAGAGAA CCGAGATCAT TTTGCCATTG CCATTGAGGT CAATCAGGAA ACAGATTCTA GTTTACAAGG AGATGAGCAA GCGTACAGTA GATCAGATGG GCAGCTGAAT AATGCACACG TAACTGATGA ACAGTTGGGA AATTTGACTG GATTTACTGA TTCTGATTTG CCAGCACCTG AGAAGGTATT AGCTGCACCT AACAGACAGG GGGATGGAAA TGATTTCATG GTTGAATCTA CGCCAGATAA AGAAGACCCT GGCACATGTA ATGATGATGC GGGGAATAAT AACATAACTG GGAAAAAACG CACTTTTACT GAGAGCACAC TAACTGCAGA AAGTTTGAAC TCTGTGGAGT CAGTTGGACT GATTCAGTCA AAGAGAACTG CAGATTCTGT CCCTGATGAC GATGATTTGT TGTCTTCTAT CTTAGTTGGA AAGTCATCCT TTCTGAAGAT GAGGCCTACA CCTGTGCTAG AACCAGCATC TACAAAACGG TTACGAGCTG CTCCCCGCTC TACTGCCACA AAGAGGAAGG TTTTAATGGA TGACCCTATG GTCTTGCATG GCGACATTAT ACGTCAACAA CTGACAAACA CTGAAGATAT ACGCCGGGTG CGAAAGAAGG CACCTTGCAC CATTCCTGAG ATCGTAATGC TTCAAAGGCA GGCTTTGGAG GATGGACTCT TAAAGGAGCC AATATTCACG GGTATGTCAG TGGAATTAGT ATCTCTGCAC AATGAGCCGT ATGATCTAAG AGGAATCATG ATAATTGAGA ATGATGACCG TCATGCTTCT GTTGGAGTGG TGGAAGATAA TGACTGTTCT GTTACAGCCG TGGAAGAAAA CTCTGCTCCT CAACCTCACC CAAATGATTC CGAGGAGCAA CCTGGTACGG CTCATACTCA CCCACAGGAG GAACAAATCA TAAACCAACA GGAAGAGATG AAAGATGATA ATGAGCTTGC TGAAAAAATA TCTGACTTGG AAGTTTTGAA GGACGGCAAT GGAGCTGCTG ATGAAGTGAA TCTTGTAGTG AGTGACGATG TCAGTCAAAT GCCGTCTGAG GAAAAACTCG ACCGTGTAGA GGATTTACAG GTGGAAGAAT CCCAGGAAAA CCATGATGGA GAAGGGGGTC AGGATGTTTG TGGGGATCTT AATGAAAAAA GTGGCACTGA CGTTATTGAA ATTGCTGAAG GCGATATAGA TAGCAACCCC ATTTTCAATG AGTCGGACTT GAAAGTTGAA GATGAACTTC CACATGAAGA TAAGAAAACG GATGCATCAG CTGAAGTTAG CGAGATTGGG ATAGACGATC AGACGCCATG CGATAACACA GTTGGCTCTA CTGAAACTGG ATGCGTAGAA ACTGGTGATT TGAGTAATAT GGCTTTGGAA AATTGCAATG AACCTCTTGT GGAAGCGAAT AATGATGGGT TGAATCCAGA GATAGAGTCT TATAACAAAT ACGAACCTCA TAATGAGATG TCTAATGAGG AGGCTTATAT GCAAAGTGCA CTAGATGGAG AACATACTTC TCGTGATGGT CTTATGGGAG ACAATGATGA AATGGATACC ATGGAAGTTG GACACGACAC AGAGTTTTTG AACGTGGATG ATGATGAAGT AGATGAAGAT CATGAGGACG ATGACATACA ATATGGTGAC GAAACTCGTC TTCTAGAAAA CAGTGGATGG TCTTCTCGTA CTAGGGCTGT GGCAAAGTAT CTCCAGACGT TATTTGATAA AGAAGCTGAG AATGGGAAGA ATGTTCTTGT GGCAGACAAA CTATTAGCTG GGAAAACCCG TAAAGAAGCA TCGAGAATGT TTTTCGAAAC CCTGGTTCTT AAAACAAGAG ATTACATCCA AGTTGAACAA GCGAAGCCCT ATGAAAGCAT CATCATAAAA CCGCGACCAA AACTCACCAA ATCCATCTTC TAGATGGAGA AGATCAGTCT TAG |
| Length | 3133 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6342796.. 6348324 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G16270.1 |
| Description | sister chromatid cohesion 1 protein 4 |
| TAIR curator summary | Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin. |
| Alias | [ATRAD21.3][SYN4][ARABIDOPSIS HOMOLOG OF RAD21 3][sister chromatid cohesion 1 protein 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg950958 | MEI2-like protein 1 |
| 2 |
Ahg491814 | Regulator of Vps4 activity in the MVB pathway protein |
| 2.64575 |
Ahg496493 | histone deacetylase 6 |
| 3 |
Ahg924045 | calpain-type cysteine protease family |
| 6 |
Ahg491448 | Sec23/Sec24 protein transport family protein |
| 8.48528 |
Ahg891118 | Endomembrane protein 70 protein family |
| 8.77496 |
Ahg481452 | KH domain-containing protein |
| 8.83176 |
Ahg475134 | Coatomer, alpha subunit |
| 8.94427 |
Ahg487993 | catalytics |
| 9.16515 |
Ahg478222 | mRNA capping enzyme family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|