| Annotation |
|---|
| Description | jgi|Araly1|496493|fgenesh2_kg.8__2309__AT5G63110.1 |
| Sequence |
TAGTAATGAC TTTCTCAGGC ATAGTAGACA CAAATTTTGC TCGGAGTAAA AACTTGGGGA TAGAGAGAGA CAGAGACTCT GAGTGAGAGA GAGAGACGAA GATGGAGGCA GACGAAAGCG GCATCTCTCT GCCGTCGGGA CCCGACGGAC GTAAGCGGCG AGTCAGTTAC TTCTACGAGC CGACGATCGG AGACTACTAC TACGGTCAAG GACATCCGAT GAAACCTCAC CGGATCCGTA TGGCTCATAG CCTAATCATT CACTATCACC TCCACCGTCG CTTAGAAATC AGTCGCCCTA ACCTCGCTGA CGCCTCCGAT ATCGGCCGGT TTCATTCGCC GGAGTATGTT GATTTCCTCG CTTCCGTTTC GCCGGAATCT ATGGGCGATC CTTCCTCTTC ACGAAACCTA AGGCGATTCA ATGTCGGTGA GGATTGTCCT GTCTTCGACG GACTTTTTGA TTTTTGCCGT GCTTCCGCCG GAGGTTCTAT TGGTGCTGCC GTCAAATTAA ACAGACAGGA CGCTGATATC GCTATCAATT GGGGCGGTGG CCTTCACCAT GCTAAGAAAA GCGAGGCCTC TGGGTTTTGC TATGTAAATG ATATCGTTTT AGGGATTCTC GAGTTGCTCA AGATGTTTAA GCGGGTTCTC TACATAGATA TCGATGTCCA CCATGGAGAT GGAGTGGAAG AAGCGTTTTA CACCACTGAT AGAGTTATGA CTGTTTCTTT CCACAAATTT GGGGACTTTT TCCCCGGAAC TGGTCACATA AGAGATGTTG GCGCAGAAAA AGGGAAATAC TATGCTCTAA ATGTTCCGCT AAACGATGGT ATGGACGATG AACGTTTCCG CAGCTTGTTT AGACCTCTTA TCCAGAAGGT TATGGAAGTG TATCAGCCAG AGGCAGTTGT TCTTCAATGT GGGGCTGACT CGTTAAGTGG TGATCGGTTG GGTTGCTTCA ACTTATCAGT CAAGGGTCAC GCTGATTGCC TTCGGTTCTT AAGATCTTAC AACGTTCCTC TCATGGTCTT GGGTGGTGGA GGGTATACTA TTCGAAATGT TGCTCGTTGC TGGTGTTATG AGACTGCAGT TGCTGTTGGA GTAGAGCCAG ACAACAAACT CCCTTACAAT GAGTATTTTG AGTATTTCGG CCCAGATTAT ACGCTTCATG TCGACCCAGG TCCAATGGAG AATTTAAACA CGCCAAAAGA TATGGAGAAG ATAAGGAACA CATTGCTGGA ACAACTTTCG GGACTAATAC ACGCACCTAG CGTCCAGTTT CAGCACACAC CACCAGTCAA TCGAGTTTTG GACGAGCCGG AAGAAGACAT GGAGCAAAGA CCAAAGCCTC GCATTTGGAG TGGAACTGTG ACTTATGAAT CAGACAGTGA CGATGATGAT AAACCTCTTC ATGGTTACTC AGGTCGTGGT GGCGCAATTA TGGACAGGGA CTCTACAGGT GAAGATGAAA TGGAAGACGA TAACCCAGAG CCAGACGTGA ATCCCCCATC GTCTTAAACC AGCTTGATGG TTGGTGGGTC TTTTGCCATA TGGTAATGTC GGCAGATTTA AGACACAAGT TAGGGGAATG ATGATTCTTT CATGTTTTTT CAGCAACCTT TTGAGTTCTG TGAAAACGCT GCATTGATTA GAACGGTGAC AACTGACAAG TATTTTGGCT CAAGTTAGAA AATCAGAAGA TGTGAAAAAT GCAAAGAAAC TTTTT |
| Length | 1725 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 19597844.. 19600584 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G63110.1 |
| Description | histone deacetylase 6 |
| TAIR curator summary | RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. |
| Alias | [ATHDA6][AXE1][HDA6][RPD3B][RTS1][SIL1][HISTONE DEACETYLASE 6][histone deacetylase 6][RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.64575 |
Ahg941120 | sister chromatid cohesion 1 protein 4 |
| 11.1355 |
Ahg940649 | |
| 11.3137 |
Ahg937176 | F-box associated ubiquitination effector family protein |
| 13.2288 |
Ahg490579 | SEC7-like guanine nucleotide exchange family protein |
| 18.3848 |
Ahg941550 | regulatory particle triple-A ATPase 6A |
| 20.6398 |
Ahg951196 | Glycosyl hydrolases family 31 protein |
| 20.8806 |
Ahg484624 | Oxoglutarate/iron-dependent oxygenase |
| 23.4734 |
Ahg943609 | MAP kinase 4 |
| 23.9792 |
Ahg477936 | DNAJ heat shock N-terminal domain-containing protein |
| 24.0624 |
Ahg491854 | regulatory particle AAA-ATPase 2A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|